Variant report

Variant	rs10983836
Chromosome Location	chr9:100573227-100573228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1006047	0.93[ASN][1000 genomes]
rs1007506	0.93[ASN][1000 genomes]
rs10983835	1.00[ASN][1000 genomes]
rs10983852	1.00[ASN][1000 genomes]
rs10983853	0.89[AFR][1000 genomes]
rs10983855	0.89[AFR][1000 genomes]
rs10983867	1.00[ASN][1000 genomes]
rs10983868	1.00[ASN][1000 genomes]
rs10983889	0.91[AFR][1000 genomes]
rs10984079	0.82[ASN][1000 genomes]
rs10984134	0.82[ASN][1000 genomes]
rs10984156	0.82[ASN][1000 genomes]
rs10984195	0.82[ASN][1000 genomes]
rs10984218	0.82[ASN][1000 genomes]
rs10984222	0.82[ASN][1000 genomes]
rs1156850	0.82[AFR][1000 genomes]
rs1822416	0.89[AFR][1000 genomes]
rs2282190	0.82[ASN][1000 genomes]
rs2401638	0.89[AFR][1000 genomes]
rs28417086	0.82[ASN][1000 genomes]
rs28697997	0.82[ASN][1000 genomes]
rs3021525	0.84[ASN][1000 genomes]
rs3758250	0.84[ASN][1000 genomes]
rs4639621	0.93[ASN][1000 genomes]
rs7037853	1.00[ASN][1000 genomes]
rs7859751	0.80[AFR][1000 genomes]
rs7870540	0.80[AFR][1000 genomes]
rs7870795	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100566600-100574000	Weak transcription	Pancreas	Pancrea
2	chr9:100568800-100575000	Enhancers	HMEC	breast
3	chr9:100568800-100575000	Enhancers	NHEK	skin
4	chr9:100569000-100574800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:100569400-100574800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:100569400-100575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:100570600-100574200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:100573200-100573800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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