Variant report

Variant	rs7859751
Chromosome Location	chr9:100575888-100575889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100575746..100577323-chr9:100683251..100684821,2	K562	blood:
2	chr9:100568053..100570200-chr9:100575579..100577237,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10739513	0.84[AMR][1000 genomes]
rs10759960	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10983836	0.80[AFR][1000 genomes]
rs10983853	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs10983855	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10983889	0.84[AFR][1000 genomes]
rs10983975	0.81[AMR][1000 genomes]
rs1156850	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1348386	0.96[CEU][hapmap];0.81[AMR][1000 genomes]
rs1465965	0.81[AMR][1000 genomes]
rs1822416	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1867279	0.81[AMR][1000 genomes]
rs2401638	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3021523	0.81[AMR][1000 genomes]
rs4743138	0.96[CEU][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes]
rs57541835	0.82[ASN][1000 genomes]
rs6478423	0.84[AMR][1000 genomes]
rs7024345	0.84[AMR][1000 genomes]
rs7043516	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs7046645	0.81[AMR][1000 genomes]
rs7048394	0.84[AMR][1000 genomes]
rs73486634	0.82[ASN][1000 genomes]
rs73486635	0.82[ASN][1000 genomes]
rs7848950	0.81[AMR][1000 genomes]
rs7849497	0.81[AMR][1000 genomes]
rs7870540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7870795	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7870871	0.86[AMR][1000 genomes]
rs894672	0.81[AMR][1000 genomes]
rs925485	0.91[CEU][hapmap];0.81[AMR][1000 genomes]
rs925486	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7859751	TMOD1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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