Variant report

Variant	rs7046645
Chromosome Location	chr9:100617375-100617376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100617184..100619335-chr9:100637041..100639858,3	MCF-7	breast:
2	chr9:100616472..100617973-chr9:100620292..100623040,2	K562	blood:
3	chr9:100614821..100616567-chr9:100616970..100619601,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178919	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10739513	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759960	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10760017	1.00[ASN][1000 genomes]
rs10983975	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1348386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465965	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867279	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912998	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3021523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6478423	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024345	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048394	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859751	0.81[AMR][1000 genomes]
rs7870540	0.81[AMR][1000 genomes]
rs7870795	0.81[AMR][1000 genomes]
rs7870871	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs894672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907576	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs907578	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907579	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907580	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907582	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973473	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv825000	chr9:100613121-100618319	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3330300	chr9:100613506-100618154	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3421459	chr9:100614656-100617704	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100613400-100618800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:100613600-100618000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:100613800-100617400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:100613800-100617800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:100614000-100617800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr9:100614000-100617800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:100615600-100617400	Active TSS	Hela-S3	cervix
8	chr9:100616600-100617600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:100616600-100617600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr9:100616600-100617600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr9:100616600-100617600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
12	chr9:100616600-100617600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
13	chr9:100616800-100617400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
14	chr9:100616800-100617400	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
15	chr9:100616800-100617400	Weak transcription	Pancreas	Pancrea
16	chr9:100616800-100617600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:100616800-100617600	ZNF genes & repeats	Spleen	Spleen
18	chr9:100616800-100618000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:100616800-100618400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:100617000-100617400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
21	chr9:100617000-100617400	Bivalent/Poised TSS	Right Ventricle	heart
22	chr9:100617000-100617600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr9:100617000-100617600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:100617000-100617800	Flanking Active TSS	A549	lung
25	chr9:100617000-100618200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
26	chr9:100617200-100617400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr9:100617200-100617400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:100617200-100617400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
29	chr9:100617200-100617400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
30	chr9:100617200-100617400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:100617200-100617400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
32	chr9:100617200-100617600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
33	chr9:100617200-100617600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
34	chr9:100617200-100617600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
35	chr9:100617200-100617600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
36	chr9:100617200-100617600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:100617200-100617600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:100617200-100617600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:100617200-100617800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
40	chr9:100617200-100617800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
41	chr9:100617200-100617800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
42	chr9:100617200-100618000	Bivalent/Poised TSS	Thymus	Thymus
43	chr9:100617200-100618200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
44	chr9:100617200-100618600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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