Variant report

Variant	rs10759960
Chromosome Location	chr9:100608745-100608746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100565524..100567505-chr9:100607472..100609592,3	MCF-7	breast:
2	chr9:100456538..100459527-chr9:100606763..100609012,2	K562	blood:
3	chr9:100608561..100611122-chr9:100630030..100632695,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10739513	0.84[AMR][1000 genomes]
rs10983975	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1156850	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1348386	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1465965	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1867279	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1912998	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3021523	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41274260	0.86[ASN][1000 genomes]
rs4743138	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6478423	0.84[AMR][1000 genomes]
rs7024345	0.84[AMR][1000 genomes]
rs7043516	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs7046645	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7048394	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7848950	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7849497	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7859751	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7870540	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7870795	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7870871	0.83[AMR][1000 genomes]
rs894672	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs907576	0.86[AMR][1000 genomes]
rs907578	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs907579	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs907580	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs907582	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs925485	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs925486	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs973473	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100608600-100608800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
2	chr9:100608600-100608800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100608600-100608800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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