Variant report

Variant	rs41274260
Chromosome Location	chr9:100617949-100617950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10759960	0.86[ASN][1000 genomes]
rs10983853	0.96[EUR][1000 genomes]
rs10983855	0.96[EUR][1000 genomes]
rs10983871	0.96[EUR][1000 genomes]
rs10983889	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10983920	0.81[ASN][1000 genomes]
rs10983958	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10983959	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1822416	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2401638	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57541835	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7043516	0.89[ASN][1000 genomes]
rs72753507	0.89[ASN][1000 genomes]
rs72753509	0.89[ASN][1000 genomes]
rs73486634	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73486635	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv825000	chr9:100613121-100618319	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3330300	chr9:100613506-100618154	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100613400-100618800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:100613600-100618000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:100616800-100618000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:100616800-100618400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:100617000-100618200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr9:100617200-100618000	Bivalent/Poised TSS	Thymus	Thymus
7	chr9:100617200-100618200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr9:100617200-100618600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr9:100617400-100618000	Bivalent Enhancer	Esophagus	oesophagus
10	chr9:100617600-100618200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr9:100617600-100620000	Weak transcription	Pancreas	Pancrea
12	chr9:100617800-100618200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr9:100617800-100618200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:100617800-100618200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:100617800-100618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr9:100617800-100619200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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