Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:100580519..100582088-chr9:100585362..100587285,2	K562	blood:
2	chr9:100564515..100567893-chr9:100582298..100586043,4	MCF-7	breast:
3	chr9:100585593..100587654-chr9:100591414..100594781,4	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10818124	0.85[ASN][1000 genomes]
rs10983833	0.89[ASN][1000 genomes]
rs10983853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983889	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10983958	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10983959	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1156850	0.94[ASN][1000 genomes]
rs1443434	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs1443435	0.86[CHB][hapmap];0.95[CHD][hapmap]
rs1822416	1.00[EUR][1000 genomes]
rs1867278	0.84[CHB][hapmap];0.95[CHD][hapmap]
rs2401638	1.00[EUR][1000 genomes]
rs3758249	0.86[CHB][hapmap]
rs3758251	0.86[CHB][hapmap]
rs41274260	0.96[EUR][1000 genomes]
rs4297160	0.90[ASN][1000 genomes]
rs57541835	1.00[EUR][1000 genomes]
rs7033765	0.90[ASN][1000 genomes]
rs7045138	0.90[ASN][1000 genomes]
rs73486634	0.88[EUR][1000 genomes]
rs73486635	0.92[EUR][1000 genomes]
rs7870540	0.94[ASN][1000 genomes]
rs7870795	0.93[CHB][hapmap];0.83[CHD][hapmap];0.94[ASN][1000 genomes]
rs894673	0.86[CHB][hapmap]
rs907577	0.86[CHB][hapmap];0.95[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10983871	Hs.43687	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100581400-100586400	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: