Variant report

Variant	rs7033765
Chromosome Location	chr9:100591705-100591706
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100585593..100587654-chr9:100591414..100594781,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10046805	0.87[ASN][1000 genomes]
rs10124220	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10818124	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10818133	0.87[ASN][1000 genomes]
rs10983833	0.88[ASN][1000 genomes]
rs10983853	0.93[CHB][hapmap];0.90[ASN][1000 genomes]
rs10983855	0.93[CHB][hapmap];0.90[ASN][1000 genomes]
rs10983871	0.90[ASN][1000 genomes]
rs1156850	0.96[ASN][1000 genomes]
rs12341377	0.87[ASN][1000 genomes]
rs12347191	0.87[ASN][1000 genomes]
rs12348304	0.87[ASN][1000 genomes]
rs12348691	0.87[ASN][1000 genomes]
rs1443432	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1443434	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.87[ASN][1000 genomes]
rs1443435	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.87[ASN][1000 genomes]
rs1867277	0.84[ASN][1000 genomes]
rs1867278	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap]
rs2401639	0.87[ASN][1000 genomes]
rs3021526	0.82[ASN][1000 genomes]
rs3758248	0.87[ASN][1000 genomes]
rs3758249	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3758251	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4297160	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460498	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6478413	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6478437	0.87[ASN][1000 genomes]
rs7045138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851552	0.87[ASN][1000 genomes]
rs7851660	0.86[ASN][1000 genomes]
rs7870540	0.96[ASN][1000 genomes]
rs7870795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs894673	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs907577	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7033765	GALNT12	cis	cerebellum	SCAN
rs7033765	PTCH1	cis	parietal	SCAN
rs7033765	C9orf156	cis	cerebellum	SCAN
rs7033765	C9orf156	cis	parietal	SCAN
rs7033765	FANCC	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100590600-100593200	Weak transcription	H9 Cell Line	embryonic stem cell

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