Variant report

Variant	rs10818124
Chromosome Location	chr9:100603008-100603009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100602066..100604948-chr9:100618492..100620676,2	K562	blood:
2	chr9:100602789..100604485-chr9:100606547..100608387,2	K562	blood:
3	chr9:100579849..100582804-chr9:100601637..100604400,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10046805	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10113884	0.80[EUR][1000 genomes]
rs10119760	0.80[EUR][1000 genomes]
rs10119853	0.80[EUR][1000 genomes]
rs10120412	0.85[AMR][1000 genomes]
rs10122541	0.85[AMR][1000 genomes]
rs10123699	0.81[AMR][1000 genomes]
rs10759981	0.82[AMR][1000 genomes]
rs10818133	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10818175	0.82[AMR][1000 genomes]
rs10983833	0.84[ASN][1000 genomes]
rs10983853	0.85[ASN][1000 genomes]
rs10983855	0.85[ASN][1000 genomes]
rs10983871	0.85[ASN][1000 genomes]
rs10983920	0.83[AFR][1000 genomes]
rs10983958	0.81[ASN][1000 genomes]
rs10983959	0.81[ASN][1000 genomes]
rs10984103	0.81[AMR][1000 genomes]
rs1156850	0.91[ASN][1000 genomes]
rs12341377	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12342417	0.81[AMR][1000 genomes]
rs12343182	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12347191	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348304	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348691	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13299924	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13302470	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1443434	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1443435	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1443436	0.82[AMR][1000 genomes]
rs1867277	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1867278	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1867280	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1955143	0.82[AMR][1000 genomes]
rs1955144	0.82[AMR][1000 genomes]
rs1955145	0.82[AMR][1000 genomes]
rs2401639	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2417575	0.85[AMR][1000 genomes]
rs2417576	0.85[AMR][1000 genomes]
rs3021526	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3758248	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758249	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758251	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4297160	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4460498	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6478437	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478445	0.80[EUR][1000 genomes]
rs7033765	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7037175	0.82[AMR][1000 genomes]
rs7045138	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7851552	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7851660	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7860144	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7868534	0.80[AMR][1000 genomes]
rs7870540	0.91[ASN][1000 genomes]
rs7870795	0.91[ASN][1000 genomes]
rs894673	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs907577	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs925487	0.81[AMR][1000 genomes]
rs993501	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100602200-100603200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100602400-100603200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:100602400-100603200	Enhancers	HMEC	breast
4	chr9:100602400-100603200	Enhancers	Osteobl	bone
5	chr9:100602400-100603600	Enhancers	NHEK	skin
6	chr9:100602600-100603200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:100602600-100603200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:100602600-100603600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:100603000-100603200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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