Variant report

Variant	rs10983833
Chromosome Location	chr9:100571988-100571989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10818124	0.84[ASN][1000 genomes]
rs10983853	0.89[ASN][1000 genomes]
rs10983855	0.89[ASN][1000 genomes]
rs10983871	0.89[ASN][1000 genomes]
rs1156850	0.84[ASN][1000 genomes]
rs4297160	0.88[ASN][1000 genomes]
rs7033765	0.88[ASN][1000 genomes]
rs7045138	0.88[ASN][1000 genomes]
rs7870540	0.84[ASN][1000 genomes]
rs7870795	0.84[ASN][1000 genomes]
rs7871887	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100566600-100574000	Weak transcription	Pancreas	Pancrea
2	chr9:100568800-100575000	Enhancers	HMEC	breast
3	chr9:100568800-100575000	Enhancers	NHEK	skin
4	chr9:100569000-100574800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:100569400-100574800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:100569400-100575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:100569600-100573000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:100570200-100572400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr9:100570200-100572600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr9:100570400-100572800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:100570600-100572000	Enhancers	HUVEC	blood vessel
12	chr9:100570600-100572800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:100570600-100574200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:100571000-100572400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:100571200-100572000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:100571400-100572600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:100571600-100572000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr9:100571600-100572200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:100571600-100572600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:100571600-100572600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:100571600-100573000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:100571800-100572000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr9:100571800-100572400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:100571800-100573200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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