Variant report

Variant	rs13302470
Chromosome Location	chr9:100615553-100615554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10046805	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10120412	0.82[AMR][1000 genomes]
rs10122541	0.82[AMR][1000 genomes]
rs10759981	0.80[AMR][1000 genomes]
rs10818124	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10818133	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10818175	0.80[AMR][1000 genomes]
rs12341377	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12343182	0.82[AMR][1000 genomes]
rs12347191	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12348304	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12348691	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13299924	0.82[AMR][1000 genomes]
rs1443434	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1443435	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1443436	0.80[AMR][1000 genomes]
rs1867277	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1867278	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1867280	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1955143	0.80[AMR][1000 genomes]
rs1955144	0.80[AMR][1000 genomes]
rs1955145	0.80[AMR][1000 genomes]
rs2401639	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2417575	0.82[AMR][1000 genomes]
rs2417576	0.82[AMR][1000 genomes]
rs3021526	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758248	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3758249	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3758251	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4460498	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6478437	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7037175	0.80[AMR][1000 genomes]
rs7851552	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7851660	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7860144	0.82[AMR][1000 genomes]
rs894673	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs907577	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv825000	chr9:100613121-100618319	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3330300	chr9:100613506-100618154	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3421459	chr9:100614656-100617704	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100613400-100615600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr9:100613400-100615600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
3	chr9:100613400-100615600	Bivalent Enhancer	Spleen	Spleen
4	chr9:100613400-100618800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:100613600-100618000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:100613800-100615600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr9:100613800-100615600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
8	chr9:100613800-100615800	Bivalent Enhancer	Fetal Intestine Large	intestine
9	chr9:100613800-100616200	Bivalent Enhancer	Liver	Liver
10	chr9:100613800-100616400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:100613800-100616400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr9:100613800-100616400	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr9:100613800-100616400	Bivalent Enhancer	Fetal Stomach	stomach
14	chr9:100613800-100616600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:100613800-100616800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr9:100613800-100617400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr9:100613800-100617800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr9:100614000-100615600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:100614000-100615600	Bivalent Enhancer	Adipose Nuclei	Adipose
20	chr9:100614000-100615600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
21	chr9:100614000-100615800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:100614000-100616400	Bivalent Enhancer	Lung	lung
23	chr9:100614000-100616600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
24	chr9:100614000-100617800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr9:100614000-100617800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:100614200-100615600	Bivalent/Poised TSS	Esophagus	oesophagus
27	chr9:100614400-100616400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr9:100614400-100616400	Bivalent Enhancer	Fetal Intestine Small	intestine
29	chr9:100614600-100615600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr9:100614600-100615600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:100614600-100615600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
32	chr9:100614600-100616400	Bivalent Enhancer	Fetal Brain Male	brain
33	chr9:100614600-100616400	Bivalent Enhancer	Left Ventricle	heart
34	chr9:100614600-100616600	Bivalent Enhancer	Placenta	Placenta
35	chr9:100614800-100615600	Bivalent Enhancer	Brain Anterior Caudate	brain
36	chr9:100614800-100615800	Bivalent Enhancer	Brain Substantia Nigra	brain
37	chr9:100614800-100616600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
38	chr9:100615000-100615600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:100615000-100615800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
40	chr9:100615000-100615800	Enhancers	Primary hematopoietic stem cells	blood
41	chr9:100615000-100616000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
42	chr9:100615000-100616200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
43	chr9:100615000-100616600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
44	chr9:100615000-100616800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
45	chr9:100615000-100617000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:100615000-100617000	Bivalent/Poised TSS	NHEK	skin
47	chr9:100615200-100615600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:100615200-100615600	Bivalent Enhancer	Primary T cells from cord blood	blood
49	chr9:100615200-100615600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:100615200-100615600	Bivalent/Poised TSS	Fetal Brain Female	brain

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