Variant report
| Variant | rs6478413 |
|---|---|
| Chromosome Location | chr9:100582024-100582025 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10113884 | 1.00[ASN][1000 genomes] |
| rs10117642 | 0.87[ASN][1000 genomes] |
| rs10119853 | 1.00[ASN][1000 genomes] |
| rs10123699 | 1.00[ASN][1000 genomes] |
| rs10124220 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10759975 | 1.00[ASN][1000 genomes] |
| rs10759981 | 1.00[ASN][1000 genomes] |
| rs10818213 | 0.86[ASN][1000 genomes] |
| rs10983845 | 0.88[AFR][1000 genomes] |
| rs12377722 | 0.88[AFR][1000 genomes] |
| rs13287360 | 1.00[ASN][1000 genomes] |
| rs1443432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1955143 | 1.00[ASN][1000 genomes] |
| rs4255258 | 1.00[ASN][1000 genomes] |
| rs4297160 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4743139 | 1.00[ASN][1000 genomes] |
| rs6478445 | 1.00[ASN][1000 genomes] |
| rs7033765 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7044121 | 1.00[ASN][1000 genomes] |
| rs7045138 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs907581 | 1.00[ASN][1000 genomes] |
| rs925487 | 1.00[ASN][1000 genomes] |
| rs993501 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043753 | chr9:100458109-100599265 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv893611 | chr9:100561055-100739888 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv6627 | chr9:100576258-100621034 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:100581400-100586400 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr9:100582000-100582800 | Bivalent Enhancer | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
