Variant report

Variant	rs7044121
Chromosome Location	chr9:100642065-100642066
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100641121..100643077-chr9:100648221..100651818,3	MCF-7	breast:
2	chr9:100640910..100642797-chr9:100817755..100820599,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10113884	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115216	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10117642	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10119760	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10119853	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120412	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10122541	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10123699	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124220	1.00[ASN][1000 genomes]
rs10512255	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10739526	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10759975	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759981	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10818175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10818213	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10818241	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10984103	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10984230	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10984235	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10984253	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12004762	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12006522	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12342417	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12343182	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12347191	0.82[EUR][1000 genomes]
rs12550872	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13286291	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13287360	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13299924	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1443432	1.00[ASN][1000 genomes]
rs1443436	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1561957	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1561961	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1955143	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955144	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1955145	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2120264	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2417575	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2417576	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28703314	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3808893	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3824495	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4255258	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460498	0.82[EUR][1000 genomes]
rs4743139	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743142	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6478413	1.00[ASN][1000 genomes]
rs6478445	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478469	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6478471	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7022148	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7027221	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7031386	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7032086	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7032114	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7034249	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7034336	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7034648	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7036589	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7037175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7037324	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7038998	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7044799	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7048255	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7860144	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7866436	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7868534	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs907581	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925487	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299258	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9775370	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs993501	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100637600-100658000	Weak transcription	Gastric	stomach
2	chr9:100637800-100652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:100638000-100642800	Weak transcription	Right Atrium	heart
4	chr9:100640200-100642200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:100640200-100642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:100640200-100642400	Weak transcription	Osteobl	bone
7	chr9:100640600-100642200	Weak transcription	NHLF	lung
8	chr9:100640600-100642400	Weak transcription	Adipose Nuclei	Adipose

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