Variant report

Variant	rs7034336
Chromosome Location	chr9:100661100-100661101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100659963..100662557-chr9:100683165..100684885,2	MCF-7	breast:
2	chr9:100629041..100631347-chr9:100659838..100661933,2	K562	blood:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10113884	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10115216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10117642	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10119760	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10119853	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10120412	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10122541	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10123699	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10512255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10512256	1.00[YRI][hapmap]
rs1059003	1.00[YRI][hapmap]
rs10739526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10759975	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10759981	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10760011	1.00[YRI][hapmap]
rs10818175	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10818213	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10818241	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10984103	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10984195	0.80[ASN][1000 genomes]
rs10984218	0.80[ASN][1000 genomes]
rs10984222	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs10984230	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10984235	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10984253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10984311	0.82[CHB][hapmap]
rs10984377	1.00[YRI][hapmap]
rs10984516	1.00[YRI][hapmap]
rs10984532	1.00[YRI][hapmap]
rs10984545	1.00[YRI][hapmap]
rs12004762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12006522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12342417	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12343182	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12347191	0.81[EUR][1000 genomes]
rs12375612	1.00[YRI][hapmap]
rs12550872	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13286291	0.83[EUR][1000 genomes]
rs13287360	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13299924	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348387	1.00[YRI][hapmap]
rs1443434	0.88[CEU][hapmap]
rs1443435	0.88[CEU][hapmap]
rs1443436	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1561957	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1561961	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17687621	1.00[YRI][hapmap]
rs1867278	0.83[CEU][hapmap]
rs1947015	1.00[YRI][hapmap]
rs1955143	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1955144	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1955145	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2120262	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2120264	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2282190	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs2417575	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2417576	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28417086	0.80[ASN][1000 genomes]
rs28697997	0.80[ASN][1000 genomes]
rs28703314	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35324451	0.82[EUR][1000 genomes]
rs3758249	0.88[CEU][hapmap]
rs3758250	0.86[CHB][hapmap]
rs3758251	0.88[CEU][hapmap]
rs3808893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808895	0.86[CHB][hapmap]
rs3824495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4255258	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4460498	0.81[EUR][1000 genomes]
rs4743139	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743142	0.89[EUR][1000 genomes]
rs6478445	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478469	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6478471	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7022148	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027221	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7031386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032086	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7032114	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7034249	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7034648	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7037175	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7037324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7038998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7044121	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7044799	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7048255	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72753537	0.84[ASN][1000 genomes]
rs7851498	1.00[YRI][hapmap]
rs7854948	1.00[YRI][hapmap]
rs7860144	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7866436	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7868534	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs894673	0.88[CEU][hapmap]
rs907577	0.88[CEU][hapmap]
rs907581	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs925487	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9299258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9775370	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs993501	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7034336	C9orf156	cis	Frontal Cortex	GTEx
rs7034336	C9orf156	cis	Temporal Cortex	GTEx

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100652600-100662400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr9:100652800-100662000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:100652800-100662000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:100652800-100666600	Weak transcription	Fetal Lung	lung
5	chr9:100653000-100662600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:100653000-100663400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr9:100653000-100667000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:100654200-100666600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:100654600-100662400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:100656000-100662400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:100656000-100662400	Weak transcription	Primary B cells from cord blood	blood
12	chr9:100656000-100662400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:100656000-100662400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:100656000-100662600	Weak transcription	Adipose Nuclei	Adipose
15	chr9:100656000-100667600	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:100656000-100669400	Weak transcription	Brain Substantia Nigra	brain
17	chr9:100656200-100661800	Weak transcription	Fetal Stomach	stomach
18	chr9:100656200-100662800	Weak transcription	HSMM	muscle
19	chr9:100656200-100665600	Weak transcription	Dnd41	blood
20	chr9:100656200-100666800	Weak transcription	Brain Germinal Matrix	brain
21	chr9:100656200-100670400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:100656400-100668400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr9:100656400-100669800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:100656400-100669800	Weak transcription	Fetal Brain Female	brain
25	chr9:100656600-100662200	Weak transcription	Lung	lung
26	chr9:100656600-100663000	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:100656600-100667000	Weak transcription	Brain Anterior Caudate	brain
28	chr9:100656800-100666800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:100656800-100668400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:100656800-100669400	Weak transcription	Left Ventricle	heart
31	chr9:100656800-100672400	Weak transcription	Stomach Mucosa	stomach
32	chr9:100657000-100662000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:100657000-100662600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr9:100657000-100666600	Weak transcription	Placenta	Placenta
35	chr9:100657000-100669400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:100657000-100669400	Weak transcription	Right Ventricle	heart
37	chr9:100657800-100662200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:100658000-100665000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr9:100658200-100664800	Weak transcription	Fetal Intestine Large	intestine
40	chr9:100658200-100671600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:100658400-100661800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:100658400-100662000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr9:100658400-100662000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:100658400-100662400	Weak transcription	Fetal Thymus	thymus
45	chr9:100658400-100662600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:100658400-100669400	Weak transcription	Hela-S3	cervix
47	chr9:100658400-100671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:100658600-100662000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:100658600-100662200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:100658600-100662200	Weak transcription	Brain Angular Gyrus	brain

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