Variant report

Variant	rs10984532
Chromosome Location	chr9:100723956-100723957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100721029..100724062-chr9:100744611..100747071,5	MCF-7	breast:
2	chr9:100717154..100719569-chr9:100723550..100725894,3	K562	blood:
3	chr9:100698882..100701716-chr9:100722332..100724785,2	K562	blood:
4	chr9:100695365..100698357-chr9:100723425..100724999,2	K562	blood:
5	chr9:100681341..100688036-chr9:100719041..100726043,8	K562	blood:
6	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
7	chr9:100722151..100724703-chr9:100725851..100728367,2	MCF-7	breast:
8	chr9:100703047..100707338-chr9:100720648..100725664,5	K562	blood:
9	chr9:100704233..100707185-chr9:100722015..100725827,3	K562	blood:
10	chr9:100698423..100701037-chr9:100720373..100724214,5	K562	blood:
11	chr9:100722679..100725076-chr9:100759311..100761472,2	K562	blood:
12	chr9:100681285..100688110-chr9:100720096..100725626,14	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236896	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000136929	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10115216	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10512255	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10512256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739526	1.00[YRI][hapmap]
rs10760011	1.00[YRI][hapmap]
rs10984009	1.00[CEU][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs10984098	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs10984253	1.00[YRI][hapmap]
rs10984377	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984522	0.92[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984545	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12004762	1.00[YRI][hapmap]
rs12006522	1.00[YRI][hapmap]
rs12156487	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375612	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376113	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1348387	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561957	1.00[YRI][hapmap]
rs17687621	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs1947015	0.91[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120262	1.00[YRI][hapmap]
rs3808893	1.00[YRI][hapmap]
rs3824495	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs4514106	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742708	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743143	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743144	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4743149	0.93[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55978521	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027221	1.00[YRI][hapmap]
rs7031386	1.00[YRI][hapmap]
rs7034336	1.00[YRI][hapmap]
rs7036589	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs7037172	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038998	1.00[YRI][hapmap]
rs7043516	0.93[CEU][hapmap];0.86[MEX][hapmap]
rs7048255	1.00[YRI][hapmap]
rs72753537	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72753557	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753579	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753581	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753588	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851498	0.87[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854948	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299258	0.90[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10984532	ZNF782	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr9:100721800-100726200	Weak transcription	HSMMtube	muscle
3	chr9:100722400-100727400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:100722600-100730800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:100723200-100724400	Flanking Active TSS	K562	blood
6	chr9:100723400-100724200	Weak transcription	Fetal Brain Female	brain
7	chr9:100723800-100725800	Enhancers	Brain Germinal Matrix	brain

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