Variant report

Variant	rs72753579
Chromosome Location	chr9:100717789-100717790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100716917..100718589-chr9:100720571..100722147,3	K562	blood:
2	chr9:100713649..100719134-chr9:100743191..100747576,7	MCF-7	breast:
3	chr9:100706165..100709021-chr9:100715689..100718287,2	MCF-7	breast:
4	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
5	chr9:100681885..100689095-chr9:100713866..100720156,11	MCF-7	breast:
6	chr9:100704268..100707932-chr9:100713154..100718710,6	K562	blood:
7	chr9:100683535..100689169-chr9:100714844..100718494,7	K562	blood:
8	chr9:100690903..100692995-chr9:100717083..100718870,2	K562	blood:
9	chr9:100717654..100720111-chr9:100754691..100757274,2	K562	blood:
10	chr9:100697884..100704099-chr9:100714128..100720073,9	K562	blood:
11	chr9:100717154..100719569-chr9:100723550..100725894,3	K562	blood:
12	chr9:100697884..100700117-chr9:100716983..100718742,2	K562	blood:
13	chr9:100716593..100718657-chr9:100745564..100747755,5	MCF-7	breast:
14	chr9:100716666..100719267-chr9:100720012..100722937,7	K562	blood:
15	chr9:100716579..100718542-chr9:100728846..100731409,2	K562	blood:
16	chr9:100684440..100688898-chr9:100715006..100719142,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136929	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10512256	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059003	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984098	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10984377	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984522	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984532	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984545	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12156487	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375612	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376113	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1348387	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687621	0.95[EUR][1000 genomes]
rs1947015	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4742708	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743143	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4743144	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743149	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55978521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037172	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753537	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72753557	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753588	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851498	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854948	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr9:100713800-100718800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr9:100716600-100717800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:100716800-100718000	Enhancers	Fetal Thymus	thymus
5	chr9:100717000-100718000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:100717200-100718000	Enhancers	Thymus	Thymus
7	chr9:100717200-100719600	Enhancers	K562	blood
8	chr9:100717400-100718600	Weak transcription	Stomach Mucosa	stomach
9	chr9:100717600-100721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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