Variant report

Variant	rs10984516
Chromosome Location	chr9:100718775-100718776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100713649..100719134-chr9:100743191..100747576,7	MCF-7	breast:
2	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
3	chr9:100681885..100689095-chr9:100713866..100720156,11	MCF-7	breast:
4	chr9:100690903..100692995-chr9:100717083..100718870,2	K562	blood:
5	chr9:100717654..100720111-chr9:100754691..100757274,2	K562	blood:
6	chr9:100697884..100704099-chr9:100714128..100720073,9	K562	blood:
7	chr9:100717154..100719569-chr9:100723550..100725894,3	K562	blood:
8	chr9:100716666..100719267-chr9:100720012..100722937,7	K562	blood:
9	chr9:100684440..100688898-chr9:100715006..100719142,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANP32B-2	chr9:100718550-100719771	l_3820_chr9:100713273-100719771_breast

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10115216	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10512255	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10512256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739526	1.00[YRI][hapmap]
rs10760011	1.00[YRI][hapmap]
rs10984009	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs10984098	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10984253	1.00[YRI][hapmap]
rs10984377	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984522	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984532	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984545	1.00[ASW][hapmap];0.93[CEU][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12004762	1.00[YRI][hapmap]
rs12006522	1.00[YRI][hapmap]
rs12156487	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375612	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376113	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1348387	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443433	0.82[GIH][hapmap]
rs1561957	1.00[YRI][hapmap]
rs17687621	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs1947015	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120262	1.00[YRI][hapmap]
rs3808893	1.00[YRI][hapmap]
rs3824495	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs4514106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4742708	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743143	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4743144	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743149	0.93[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55978521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027221	1.00[YRI][hapmap]
rs7031386	1.00[YRI][hapmap]
rs7034336	1.00[YRI][hapmap]
rs7036589	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs7037172	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038998	1.00[YRI][hapmap]
rs7043516	0.93[CEU][hapmap];0.86[MEX][hapmap]
rs7048255	1.00[YRI][hapmap]
rs72753537	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72753557	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753588	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851498	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854948	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299258	0.90[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10984516	ZNF782	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr9:100713800-100718800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr9:100717200-100719600	Enhancers	K562	blood
4	chr9:100717600-100721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:100717800-100721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:100718000-100721000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:100718600-100719800	Enhancers	Stomach Mucosa	stomach

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