Variant report

Variant	rs10984098
Chromosome Location	chr9:100638518-100638519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100617184..100619335-chr9:100637041..100639858,3	MCF-7	breast:
2	chr9:100636360..100639098-chr9:100684329..100685877,2	MCF-7	breast:
3	chr9:100637402..100640995-chr9:100649849..100652626,3	MCF-7	breast:
4	chr9:100563307..100565719-chr9:100637927..100639761,2	MCF-7	breast:
5	chr9:100637251..100639094-chr9:100643727..100646653,2	K562	blood:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10512256	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1059003	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10983845	1.00[ASN][1000 genomes]
rs10983892	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983893	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984009	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984377	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10984516	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10984522	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10984532	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs10984545	0.86[CEU][hapmap];0.88[AMR][1000 genomes]
rs12156487	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12375612	0.93[CEU][hapmap];0.83[AMR][1000 genomes]
rs12376113	0.88[AMR][1000 genomes]
rs12377722	1.00[ASN][1000 genomes]
rs13295123	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348387	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1443433	1.00[ASN][1000 genomes]
rs17687621	0.93[CEU][hapmap]
rs1947015	0.83[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2805835	1.00[YRI][hapmap]
rs4514106	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4742708	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743143	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743144	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743149	0.93[CEU][hapmap];0.88[AMR][1000 genomes]
rs55978521	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6478403	1.00[ASN][1000 genomes]
rs7032302	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037172	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7043516	0.93[CEU][hapmap]
rs7048255	1.00[YRI][hapmap]
rs721417	1.00[ASN][1000 genomes]
rs72751594	1.00[ASN][1000 genomes]
rs72751597	1.00[ASN][1000 genomes]
rs72753506	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753508	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753537	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72753557	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72753579	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72753581	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72753588	0.83[AMR][1000 genomes]
rs7851498	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs7854948	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7860766	1.00[ASN][1000 genomes]
rs7871887	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100631800-100639400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:100635800-100640400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:100636000-100638800	Enhancers	NHEK	skin
4	chr9:100636000-100639200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:100636000-100639200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:100636000-100640400	Enhancers	HMEC	breast
7	chr9:100636400-100638600	Weak transcription	HSMM	muscle
8	chr9:100636600-100638800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:100636600-100639600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:100637600-100658000	Weak transcription	Gastric	stomach
11	chr9:100637800-100639800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:100637800-100652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:100638000-100642800	Weak transcription	Right Atrium	heart
14	chr9:100638200-100638800	Enhancers	Hela-S3	cervix
15	chr9:100638200-100640000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:100638400-100638800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:100638400-100639000	Weak transcription	Esophagus	oesophagus
18	chr9:100638400-100639000	Flanking Active TSS	A549	lung
19	chr9:100638400-100639200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:100638400-100640000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr9:100638400-100640200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:100638400-100640200	Enhancers	NHDF-Ad	bronchial

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