Variant report

Variant	rs721417
Chromosome Location	chr9:100593215-100593216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10983845	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983892	1.00[ASN][1000 genomes]
rs10983893	1.00[ASN][1000 genomes]
rs10983896	1.00[ASN][1000 genomes]
rs10984009	1.00[ASN][1000 genomes]
rs10984098	1.00[ASN][1000 genomes]
rs12377722	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295123	1.00[ASN][1000 genomes]
rs1443433	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478403	1.00[ASN][1000 genomes]
rs7032302	1.00[ASN][1000 genomes]
rs72751594	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751597	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753506	1.00[ASN][1000 genomes]
rs72753508	1.00[ASN][1000 genomes]
rs7860766	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871887	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100592600-100593600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:100593000-100593400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:100593000-100593400	Enhancers	Fetal Intestine Small	intestine
4	chr9:100593000-100593400	Enhancers	Fetal Kidney	kidney
5	chr9:100593000-100593800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:100593000-100593800	Enhancers	A549	lung
7	chr9:100593200-100593400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:100593200-100593400	Enhancers	HepG2	liver
9	chr9:100593200-100593600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
10	chr9:100593200-100593800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr9:100593200-100593800	Enhancers	Brain Germinal Matrix	brain
12	chr9:100593200-100594000	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr9:100593200-100594200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:100593200-100594400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr9:100593200-100594600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:100593200-100594600	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links