Variant report
| Variant | rs10983896 |
|---|---|
| Chromosome Location | chr9:100596328-100596329 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10512256 | 0.82[EUR][1000 genomes] |
| rs1059003 | 0.82[EUR][1000 genomes] |
| rs10983845 | 1.00[ASN][1000 genomes] |
| rs10983892 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10983893 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10983920 | 0.83[AMR][1000 genomes] |
| rs10984009 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10984098 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10984377 | 0.82[EUR][1000 genomes] |
| rs12156487 | 0.82[EUR][1000 genomes] |
| rs12377722 | 1.00[ASN][1000 genomes] |
| rs13295123 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1348387 | 0.82[EUR][1000 genomes] |
| rs1443433 | 1.00[ASN][1000 genomes] |
| rs1947015 | 0.82[EUR][1000 genomes] |
| rs4743143 | 0.82[EUR][1000 genomes] |
| rs6478403 | 1.00[ASN][1000 genomes] |
| rs7032302 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7043516 | 0.81[AMR][1000 genomes] |
| rs721417 | 1.00[ASN][1000 genomes] |
| rs72751594 | 1.00[ASN][1000 genomes] |
| rs72751597 | 1.00[ASN][1000 genomes] |
| rs72753506 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72753507 | 0.81[AMR][1000 genomes] |
| rs72753508 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72753509 | 0.81[AMR][1000 genomes] |
| rs72753537 | 0.88[EUR][1000 genomes] |
| rs72753557 | 0.82[EUR][1000 genomes] |
| rs7860766 | 1.00[ASN][1000 genomes] |
| rs7871887 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043753 | chr9:100458109-100599265 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv893611 | chr9:100561055-100739888 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv6627 | chr9:100576258-100621034 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:100596000-100596400 | ZNF genes & repeats | Aorta | Aorta |
| 2 | chr9:100596000-100596400 | Enhancers | Gastric | stomach |
| 3 | chr9:100596200-100596400 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
