Variant report

Variant	rs10983893
Chromosome Location	chr9:100596165-100596166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10512256	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1059003	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs10983845	1.00[ASN][1000 genomes]
rs10983892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10983920	0.83[AMR][1000 genomes]
rs10984009	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984098	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984377	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10984516	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs10984522	0.92[CEU][hapmap]
rs10984532	1.00[CEU][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs10984545	0.86[CEU][hapmap]
rs12156487	0.82[EUR][1000 genomes]
rs12375612	1.00[CEU][hapmap]
rs12377722	1.00[ASN][1000 genomes]
rs13295123	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348387	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1443433	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16924908	0.89[ASW][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]
rs17687621	1.00[CEU][hapmap]
rs1947015	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs4742708	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs4743143	0.82[EUR][1000 genomes]
rs4743144	1.00[CEU][hapmap]
rs4743149	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs6478403	1.00[ASN][1000 genomes]
rs7032302	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043516	0.93[CEU][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes]
rs721417	1.00[ASN][1000 genomes]
rs72751594	1.00[ASN][1000 genomes]
rs72751597	1.00[ASN][1000 genomes]
rs72753506	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753507	0.81[AMR][1000 genomes]
rs72753508	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753509	0.81[AMR][1000 genomes]
rs72753537	0.88[EUR][1000 genomes]
rs72753557	0.82[EUR][1000 genomes]
rs7851498	0.87[CEU][hapmap]
rs7854948	1.00[CEU][hapmap]
rs7860766	1.00[ASN][1000 genomes]
rs7871887	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs925487	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10983893	C9orf156	cis	cerebellum	SCAN
rs10983893	ZNF782	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100596000-100596400	ZNF genes & repeats	Aorta	Aorta
2	chr9:100596000-100596400	Enhancers	Gastric	stomach

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