Variant report

Variant	rs16924908
Chromosome Location	chr9:100638923-100638924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100617184..100619335-chr9:100637041..100639858,3	MCF-7	breast:
2	chr9:100636360..100639098-chr9:100684329..100685877,2	MCF-7	breast:
3	chr9:100637402..100640995-chr9:100649849..100652626,3	MCF-7	breast:
4	chr9:100563307..100565719-chr9:100637927..100639761,2	MCF-7	breast:
5	chr9:100637251..100639094-chr9:100643727..100646653,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf156-2	chr9:100638612-100639488	XLOC_007800

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12001689	1.00[AMR][1000 genomes]
rs16924982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037853	1.00[AMR][1000 genomes]
rs7049203	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100631800-100639400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:100635800-100640400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:100636000-100639200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:100636000-100639200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:100636000-100640400	Enhancers	HMEC	breast
6	chr9:100636600-100639600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:100637600-100658000	Weak transcription	Gastric	stomach
8	chr9:100637800-100639800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:100637800-100652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:100638000-100642800	Weak transcription	Right Atrium	heart
11	chr9:100638200-100640000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:100638400-100639000	Weak transcription	Esophagus	oesophagus
13	chr9:100638400-100639000	Flanking Active TSS	A549	lung
14	chr9:100638400-100639200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:100638400-100640000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr9:100638400-100640200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:100638400-100640200	Enhancers	NHDF-Ad	bronchial
18	chr9:100638600-100639200	Enhancers	HSMM	muscle
19	chr9:100638600-100639200	Enhancers	Osteobl	bone
20	chr9:100638600-100639400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:100638600-100640000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:100638600-100640000	Enhancers	HSMMtube	muscle
23	chr9:100638600-100640200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:100638600-100640200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:100638600-100640600	Enhancers	NHLF	lung
26	chr9:100638800-100639000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:100638800-100639000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:100638800-100639400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
29	chr9:100638800-100639600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr9:100638800-100639800	Flanking Active TSS	NH-A	brain
31	chr9:100638800-100640000	Flanking Active TSS	Hela-S3	cervix
32	chr9:100638800-100640000	Flanking Active TSS	NHEK	skin

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