Variant report

Variant	rs10983889
Chromosome Location	chr9:100595003-100595004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10983836	0.91[AFR][1000 genomes]
rs10983853	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10983855	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10983871	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10983958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10983959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1156850	0.86[AFR][1000 genomes]
rs1822416	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2401638	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41274260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57541835	0.96[EUR][1000 genomes]
rs73486634	0.83[EUR][1000 genomes]
rs73486635	0.87[EUR][1000 genomes]
rs7859751	0.84[AFR][1000 genomes]
rs7870540	0.84[AFR][1000 genomes]
rs7870795	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100593600-100595200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr9:100593600-100595200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:100593800-100595400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr9:100594000-100595400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:100594000-100595400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
6	chr9:100594200-100595200	Enhancers	Primary hematopoietic stem cells	blood
7	chr9:100594400-100596000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:100595000-100595400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:100595000-100596000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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