Variant report
| Variant | rs2401638 |
|---|---|
| Chromosome Location | chr9:100584996-100584997 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:100564515..100567893-chr9:100582298..100586043,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10983836 | 0.89[AFR][1000 genomes] |
| rs10983853 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10983855 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10983871 | 1.00[EUR][1000 genomes] |
| rs10983889 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10983920 | 0.89[ASN][1000 genomes] |
| rs10983958 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10983959 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1156850 | 0.88[AFR][1000 genomes] |
| rs1822416 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41274260 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs57541835 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7043516 | 0.81[ASN][1000 genomes] |
| rs72753507 | 0.81[ASN][1000 genomes] |
| rs72753509 | 0.81[ASN][1000 genomes] |
| rs73486634 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73486635 | 0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7859751 | 0.90[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7870540 | 0.90[AFR][1000 genomes] |
| rs7870795 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043753 | chr9:100458109-100599265 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv893611 | chr9:100561055-100739888 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv6627 | chr9:100576258-100621034 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:100581400-100586400 | Weak transcription | H9 Cell Line | embryonic stem cell |
