Variant report

Variant	rs7870871
Chromosome Location	chr9:100581427-100581428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100580519..100582088-chr9:100585362..100587285,2	K562	blood:
2	chr9:100579849..100582804-chr9:100601637..100604400,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10116976	1.00[CHB][hapmap]
rs10123699	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10739513	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10759960	0.83[AMR][1000 genomes]
rs10760011	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10760017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10983975	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1156850	0.84[AMR][1000 genomes]
rs13287360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1348386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1465965	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1867279	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1912998	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3021523	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6478423	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7024345	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7046645	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7048394	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7848950	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7849497	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7859751	0.86[AMR][1000 genomes]
rs7870540	0.86[AMR][1000 genomes]
rs7870795	0.86[AMR][1000 genomes]
rs894672	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs907576	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs907578	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs907579	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs907580	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs907582	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs925485	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs925486	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs925487	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs973473	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv6627	chr9:100576258-100621034	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100581400-100586400	Weak transcription	H9 Cell Line	embryonic stem cell

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