Variant report

Variant	rs10985006
Chromosome Location	chr9:100853060-100853061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr9:100853056-100853396	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr9:100853048-100853354	H1-hESC	embryonic stem cell:	n/a	n/a
3	SP1	chr9:100853022-100853495	H1-hESC	embryonic stem cell:	n/a	n/a
4	POU5F1	chr9:100853036-100853368	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr9:100852969-100853317	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr9:100853022-100853093	LNCaP	prostate:	n/a	n/a
7	E2F6	chr9:100852948-100853427	H1-hESC	embryonic stem cell:	n/a	n/a
8	TCF12	chr9:100853019-100853314	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr9:100853049-100853392	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr9:100853059-100853412	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr9:100852964-100853328	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100852786..100853710-chr9:100978199..100978827,2	MCF-7	breast:
2	chr9:100850324..100853210-chr9:100878642..100880962,2	K562	blood:

No data

Variant related genes	Relation type
TRIM14	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10984980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr9:100845200-100856200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:100845200-100856600	Weak transcription	Small Intestine	intestine
4	chr9:100845800-100853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:100846000-100862600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr9:100846200-100862200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr9:100846400-100854200	Weak transcription	HSMMtube	muscle
8	chr9:100846400-100856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:100846400-100861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:100847400-100859400	Weak transcription	HepG2	liver
11	chr9:100847400-100869400	Weak transcription	A549	lung
12	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
13	chr9:100849200-100853600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:100849200-100854400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:100849200-100856400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:100849600-100856400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:100849800-100853200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:100849800-100856200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:100849800-100856400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:100850000-100854200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:100850000-100854400	Weak transcription	Fetal Intestine Large	intestine
22	chr9:100850400-100853200	Weak transcription	Dnd41	blood
23	chr9:100850400-100853400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr9:100850400-100853600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:100850400-100854200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:100850400-100854400	Weak transcription	Spleen	Spleen
27	chr9:100850400-100854800	Weak transcription	Lung	lung
28	chr9:100850400-100856600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:100850400-100856600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:100850400-100856600	Weak transcription	Esophagus	oesophagus
31	chr9:100850400-100856600	Weak transcription	Gastric	stomach
32	chr9:100850400-100856600	Weak transcription	Stomach Mucosa	stomach
33	chr9:100850400-100856800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:100850400-100857800	Weak transcription	Aorta	Aorta
35	chr9:100850400-100858000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:100850400-100859000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:100850400-100861000	Weak transcription	HMEC	breast
38	chr9:100850400-100868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:100850400-100880400	Weak transcription	HSMM	muscle
40	chr9:100850600-100853200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:100850600-100854000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:100850600-100854000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:100850600-100854200	Weak transcription	Placenta	Placenta
44	chr9:100850600-100854400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr9:100850600-100854600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:100850600-100855400	Weak transcription	Colonic Mucosa	Colon
47	chr9:100850600-100856400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:100850600-100856600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr9:100850600-100856800	Weak transcription	Brain Anterior Caudate	brain
50	chr9:100850600-100857200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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