Variant report

Variant	rs10988956
Chromosome Location	chr9:102813317-102813318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102806476..102810121-chr9:102811764..102815000,3	K562	blood:
2	chr9:102812971..102814743-chr9:102816744..102819684,2	K562	blood:

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10512269	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10739791	0.81[YRI][hapmap]
rs10760707	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760708	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760719	1.00[CEU][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes]
rs10760722	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10819712	0.81[YRI][hapmap]
rs10819718	0.96[EUR][1000 genomes]
rs10819721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10819726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs10819730	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10819731	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs10819732	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs10819747	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10819748	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10988932	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988936	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988944	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988948	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988952	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988954	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10988955	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988957	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988960	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988964	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988966	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988972	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[EUR][1000 genomes]
rs10988978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988979	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988980	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10988981	0.80[AMR][1000 genomes]
rs10988982	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs10988983	0.80[AMR][1000 genomes]
rs10988984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes]
rs10988988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes]
rs10988989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs10988992	0.80[AMR][1000 genomes]
rs10988993	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10988994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs10988996	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989003	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989004	1.00[CEU][hapmap]
rs10989007	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989010	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989013	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989017	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989018	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10989019	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10989020	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11515448	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11515540	0.80[AMR][1000 genomes]
rs11789482	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11790004	0.80[AMR][1000 genomes]
rs11794753	0.89[CEU][hapmap]
rs11998890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs11999915	0.80[AMR][1000 genomes]
rs12003061	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12003124	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12005926	0.80[AMR][1000 genomes]
rs12377746	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1338120	1.00[CHB][hapmap]
rs1415927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs14297	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919002	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs16919015	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs16919019	1.00[CHB][hapmap]
rs2416986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs57397295	0.80[AMR][1000 genomes]
rs57875316	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58630229	0.80[AMR][1000 genomes]
rs58948789	0.80[AMR][1000 genomes]
rs6479004	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6479006	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7020150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020780	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7021923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7022643	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap]
rs7025412	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7026341	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026529	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes]
rs7028564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs7028699	0.80[AMR][1000 genomes]
rs7028939	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031081	0.86[EUR][1000 genomes]
rs7033350	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7041818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes]
rs7043946	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047030	0.80[AMR][1000 genomes]
rs7047193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7047693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs7350268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73505717	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73505783	0.81[EUR][1000 genomes]
rs73505786	0.80[AMR][1000 genomes]
rs73505791	0.80[AMR][1000 genomes]
rs73507822	0.80[AMR][1000 genomes]
rs7847149	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7849323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850961	0.82[EUR][1000 genomes]
rs7853497	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7853561	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7853585	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7853672	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7854689	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7856932	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7857556	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes]
rs7858045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs7858119	0.80[EUR][1000 genomes]
rs7858208	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7860268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7860660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7862614	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7865483	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7866669	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7866950	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7867803	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs7868446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7870469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870701	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7872897	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7873545	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102767000-102820400	Weak transcription	Colonic Mucosa	Colon
3	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
5	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
7	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:102771400-102816200	Weak transcription	NH-A	brain
9	chr9:102783800-102814000	Weak transcription	Osteobl	bone
10	chr9:102783800-102819200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:102788600-102825600	Weak transcription	A549	lung
12	chr9:102796400-102826000	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:102796400-102828800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:102796800-102813400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:102797200-102815400	Weak transcription	HepG2	liver
16	chr9:102797400-102821000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:102797400-102827800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:102798600-102813400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:102800000-102817600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:102800000-102819200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr9:102800000-102820400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:102800000-102828800	Weak transcription	Aorta	Aorta
23	chr9:102800000-102828800	Weak transcription	Gastric	stomach
24	chr9:102800000-102828800	Weak transcription	Pancreas	Pancrea
25	chr9:102800000-102828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
27	chr9:102800200-102821200	Weak transcription	Ovary	ovary
28	chr9:102800200-102828800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
30	chr9:102802400-102829000	Weak transcription	Psoas Muscle	Psoas
31	chr9:102804000-102826000	Weak transcription	NHDF-Ad	bronchial
32	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
33	chr9:102805800-102814400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr9:102806000-102825600	Weak transcription	NHLF	lung
35	chr9:102806200-102815000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:102806400-102823200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:102807200-102814600	Strong transcription	Primary B cells from cord blood	blood
38	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
39	chr9:102807800-102814600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:102807800-102818800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:102808200-102813600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr9:102808200-102825400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr9:102809000-102814800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:102809200-102813400	Weak transcription	Brain Angular Gyrus	brain
45	chr9:102809200-102814400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr9:102809200-102814600	Strong transcription	Adipose Nuclei	Adipose
47	chr9:102809400-102813400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:102809400-102813600	Weak transcription	Brain Anterior Caudate	brain
49	chr9:102809400-102815200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:102809600-102825000	Weak transcription	Fetal Kidney	kidney

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