Variant report

Variant	rs10988967
Chromosome Location	chr9:102849539-102849540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102848064..102853071-chr9:102854113..102861263,11	K562	blood:
2	chr9:102847485..102849962-chr9:102859943..102862151,3	MCF-7	breast:
3	chr9:102845337..102851064-chr9:102859939..102862983,5	MCF-7	breast:
4	chr9:102841762..102843858-chr9:102848711..102850723,2	MCF-7	breast:
5	chr9:102848437..102852539-chr9:102852964..102856114,6	MCF-7	breast:
6	chr9:102841884..102844099-chr9:102848697..102851610,2	K562	blood:
7	chr9:102848663..102851560-chr9:102857671..102859927,2	K562	blood:

Variant related genes	Relation type
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10512269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10760707	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760708	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760719	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10760721	0.81[EUR][1000 genomes]
rs10760722	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap]
rs10819718	0.93[EUR][1000 genomes]
rs10819721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819725	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10819726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10819727	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819729	0.81[EUR][1000 genomes]
rs10819730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10819731	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819732	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819733	0.81[EUR][1000 genomes]
rs10819736	0.81[EUR][1000 genomes]
rs10819738	0.81[EUR][1000 genomes]
rs10819740	0.81[EUR][1000 genomes]
rs10819747	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap]
rs10819748	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10988932	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988936	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988944	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988948	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988952	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988954	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10988955	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988956	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988957	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988960	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988964	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988966	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988972	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs10988978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10988979	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10988980	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10988981	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10988982	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988983	0.81[AMR][1000 genomes]
rs10988984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988992	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10988993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10988994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10988996	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10989000	0.81[EUR][1000 genomes]
rs10989001	0.80[EUR][1000 genomes]
rs10989003	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10989004	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10989006	0.80[EUR][1000 genomes]
rs10989007	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10989008	0.81[EUR][1000 genomes]
rs10989010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10989012	0.81[EUR][1000 genomes]
rs10989013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10989015	0.81[EUR][1000 genomes]
rs10989017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10989018	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10989019	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10989020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10989046	1.00[CHB][hapmap]
rs11515448	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11515540	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11789482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11790004	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11790431	1.00[CHB][hapmap]
rs11793448	0.81[EUR][1000 genomes]
rs11794753	0.89[CEU][hapmap]
rs11998890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs11999915	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12003061	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12003124	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12003468	1.00[CHB][hapmap]
rs12005926	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12375636	0.81[EUR][1000 genomes]
rs12377746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs12377835	0.81[EUR][1000 genomes]
rs12379327	0.81[EUR][1000 genomes]
rs12379553	0.81[EUR][1000 genomes]
rs12380809	0.81[EUR][1000 genomes]
rs1338120	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs1415927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs14297	1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[MKK][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1529195	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919002	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs16919015	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs16919019	1.00[CHB][hapmap]
rs16919024	1.00[CHB][hapmap]
rs2416986	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34407295	0.81[EUR][1000 genomes]
rs57069181	0.81[EUR][1000 genomes]
rs57397295	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57875316	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58197960	0.81[EUR][1000 genomes]
rs58630229	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58948789	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479004	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs6479005	0.81[EUR][1000 genomes]
rs6479006	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7020150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs7021923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7022643	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7023412	0.81[EUR][1000 genomes]
rs7025271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7025412	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7026341	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026529	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7028564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7028699	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7028939	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031081	0.89[EUR][1000 genomes]
rs7033350	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap]
rs7041818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7043946	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047030	0.81[AMR][1000 genomes]
rs7047193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7047693	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7047728	0.81[EUR][1000 genomes]
rs73491437	0.80[EUR][1000 genomes]
rs73491439	0.80[EUR][1000 genomes]
rs73491441	0.80[EUR][1000 genomes]
rs7350268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs73505717	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73505783	0.84[EUR][1000 genomes]
rs73505786	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73505791	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73507822	0.81[AMR][1000 genomes]
rs73507831	0.81[EUR][1000 genomes]
rs73507832	0.81[EUR][1000 genomes]
rs7847149	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7849323	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850961	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7853497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs7853561	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7853585	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7853672	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7854444	0.80[EUR][1000 genomes]
rs7854689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7856932	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7857556	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7858045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7858119	0.83[EUR][1000 genomes]
rs7858208	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7859524	0.81[EUR][1000 genomes]
rs7860268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7860660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7862614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs7865483	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs7866669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7866700	1.00[CHB][hapmap]
rs7866950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs7867803	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868020	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7868446	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868632	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7870469	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7872014	0.81[EUR][1000 genomes]
rs7872897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs7873545	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10988967	CYLC2	cis	cerebellum	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
2	chr9:102825800-102858200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:102829200-102850600	Weak transcription	Aorta	Aorta
4	chr9:102829400-102849600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:102829400-102849800	Weak transcription	Stomach Mucosa	stomach
6	chr9:102836000-102859000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:102837000-102849800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:102837000-102859600	Weak transcription	Brain Anterior Caudate	brain
9	chr9:102837200-102860200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr9:102838800-102852200	Weak transcription	Adipose Nuclei	Adipose
11	chr9:102839600-102860000	Weak transcription	Fetal Stomach	stomach
12	chr9:102839800-102860200	Weak transcription	Right Atrium	heart
13	chr9:102840600-102855600	Weak transcription	Lung	lung
14	chr9:102842000-102850200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr9:102842200-102850600	Weak transcription	Left Ventricle	heart
16	chr9:102842200-102855600	Weak transcription	Gastric	stomach
17	chr9:102842400-102851600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:102842600-102851400	Weak transcription	Psoas Muscle	Psoas
19	chr9:102843200-102850200	Weak transcription	Spleen	Spleen
20	chr9:102843200-102851800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr9:102844000-102851200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr9:102844000-102851400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr9:102844800-102850000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:102844800-102851600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:102845000-102850600	Weak transcription	Pancreas	Pancrea
26	chr9:102846000-102849600	Weak transcription	NHEK	skin
27	chr9:102846000-102858400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:102846000-102860000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:102846200-102849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:102846200-102849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:102846200-102852400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:102846200-102855600	Weak transcription	Right Ventricle	heart
33	chr9:102846400-102849600	Weak transcription	Liver	Liver
34	chr9:102846400-102850400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr9:102846400-102856000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:102846400-102859600	Weak transcription	NHLF	lung
37	chr9:102846400-102860000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr9:102846600-102860000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:102846600-102860200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:102846800-102849800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:102846800-102850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:102846800-102850600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:102847000-102850200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:102847200-102859800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:102847200-102860000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:102847400-102850000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:102847400-102850800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:102847400-102850800	Enhancers	Primary B cells from cord blood	blood
49	chr9:102847400-102856800	Weak transcription	Small Intestine	intestine
50	chr9:102847600-102851000	Enhancers	Primary B cells from peripheral blood	blood

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