Variant report

Variant	rs10989102
Chromosome Location	chr9:103237582-103237583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103236639..103238716-chr9:103241240..103244059,2	K562	blood:
2	chr9:103235574..103237865-chr9:103240379..103242748,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12339558	1.00[ASN][1000 genomes]
rs62577585	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs944942	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103235000-103237600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:103235000-103237600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:103235000-103237600	Active TSS	Brain Angular Gyrus	brain
4	chr9:103235000-103237600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr9:103235000-103238200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:103235200-103237800	Active TSS	H1 Cell Line	embryonic stem cell
7	chr9:103235200-103237800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:103235200-103237800	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr9:103235200-103237800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr9:103235200-103238000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr9:103235200-103238000	Active TSS	Brain Anterior Caudate	brain
12	chr9:103235200-103238200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:103235400-103237600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:103236400-103237600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:103236600-103237600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr9:103236600-103241800	Weak transcription	Psoas Muscle	Psoas
17	chr9:103236800-103239000	Weak transcription	Right Atrium	heart
18	chr9:103237000-103237600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:103237000-103238000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:103237000-103238200	Enhancers	Fetal Lung	lung
21	chr9:103237000-103251600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:103237200-103237600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:103237200-103237600	Flanking Active TSS	Fetal Brain Male	brain
24	chr9:103237200-103237800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr9:103237200-103237800	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr9:103237200-103238200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr9:103237200-103238600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:103237200-103238600	Enhancers	HepG2	liver
29	chr9:103237200-103241800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:103237400-103237600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr9:103237400-103237600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:103237400-103237600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:103237400-103237600	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr9:103237400-103237800	Active TSS	Fetal Brain Female	brain
35	chr9:103237400-103238000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:103237400-103238000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr9:103237400-103238000	Enhancers	Brain Cingulate Gyrus	brain
38	chr9:103237400-103238200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr9:103237400-103238600	Enhancers	Brain Substantia Nigra	brain
40	chr9:103237400-103239200	Weak transcription	NHDF-Ad	bronchial

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