Variant report

Variant	rs62577585
Chromosome Location	chr9:103317355-103317356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103316305..103318944-chr9:103319226..103321312,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10989102	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339558	1.00[ASN][1000 genomes]
rs944942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
2	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
3	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
4	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
5	chr9:103300200-103327400	Weak transcription	Ovary	ovary
6	chr9:103300800-103319800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:103307400-103317400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:103307400-103323600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:103307400-103331800	Weak transcription	Gastric	stomach
10	chr9:103307400-103332200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:103307400-103341800	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:103307600-103320600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:103308000-103319400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:103308000-103321400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:103308000-103321600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:103308000-103327200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:103308000-103340200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:103308600-103345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:103309200-103317800	Weak transcription	NH-A	brain
21	chr9:103309400-103318000	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr9:103309800-103317400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:103310000-103320600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:103311000-103328400	Weak transcription	Fetal Heart	heart
25	chr9:103311600-103330400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:103311800-103319600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:103311800-103321800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:103311800-103342400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:103312000-103319600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:103312000-103327200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:103312200-103328200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:103313000-103318400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr9:103313200-103317600	Weak transcription	Brain Anterior Caudate	brain
34	chr9:103313200-103340800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:103313400-103319200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:103313400-103329400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr9:103313400-103331200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:103313400-103332000	Weak transcription	Fetal Lung	lung
39	chr9:103313800-103319200	Weak transcription	HSMM	muscle
40	chr9:103314000-103323600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:103314800-103319000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:103316200-103318600	Enhancers	Brain Substantia Nigra	brain
43	chr9:103316400-103318800	Enhancers	Brain Hippocampus Middle	brain
44	chr9:103316400-103320000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:103316400-103323200	Weak transcription	Brain Germinal Matrix	brain
46	chr9:103316600-103318400	Enhancers	Brain Angular Gyrus	brain
47	chr9:103316600-103318400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr9:103316600-103318600	Enhancers	Brain Cingulate Gyrus	brain
49	chr9:103316600-103320000	Enhancers	HSMMtube	muscle
50	chr9:103317200-103318400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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