Variant report

Variant	rs10989513
Chromosome Location	chr9:104219823-104219824
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104219436..104220096-chr9:104292310..104293060,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10989507	0.80[EUR][1000 genomes]
rs10989508	0.80[EUR][1000 genomes]
rs10989509	0.80[EUR][1000 genomes]
rs10989510	0.86[EUR][1000 genomes]
rs10989511	0.88[EUR][1000 genomes]
rs10989514	0.89[EUR][1000 genomes]
rs10989517	0.89[EUR][1000 genomes]
rs13283255	0.86[EUR][1000 genomes]
rs13284199	0.86[EUR][1000 genomes]
rs13297805	0.86[EUR][1000 genomes]
rs34160569	0.86[EUR][1000 genomes]
rs34664558	0.86[EUR][1000 genomes]
rs71491792	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3404236	chr9:104217731-104222129	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3410243	chr9:104218581-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3403455	chr9:104218656-104221504	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3492403	chr9:104219006-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv2651786	chr9:104219161-104220762	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3482587	chr9:104219276-104220783	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3492405	chr9:104219397-104221488	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv512110	chr9:104219411-104220546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3323386	chr9:104219481-104220929	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv9164	chr9:104219490-104220613	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1956616	chr9:104219535-104220567	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3482586	chr9:104219593-104220484	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3492406	chr9:104219594-104220523	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3492407	chr9:104219599-104220472	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3492401	chr9:104219618-104220458	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3482582	chr9:104219626-104220451	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3482584	chr9:104219632-104220481	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3492402	chr9:104219638-104220429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3492404	chr9:104219646-104220452	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3482581	chr9:104219647-104220436	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv4410	chr9:104219671-104220478	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv3482583	chr9:104219679-104220388	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv3492400	chr9:104219695-104220379	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv3482588	chr9:104219696-104220383	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv3492409	chr9:104219696-104220383	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv415685	chr9:104219700-104220382	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104212000-104221200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:104212000-104241400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:104216800-104220400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:104217000-104227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:104218200-104222000	Enhancers	HepG2	liver
6	chr9:104218200-104223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:104218600-104220000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:104218600-104228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:104218800-104223400	Weak transcription	NH-A	brain
10	chr9:104219000-104220000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:104219000-104221800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:104219200-104220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:104219600-104220200	Weak transcription	Liver	Liver
14	chr9:104219600-104220600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:104219600-104220600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:104219600-104220600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:104219600-104220600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:104219600-104220600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:104219600-104220800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:104219800-104220200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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