Variant report

Variant	nsv893626
Chromosome Location	chr9:104172936-104324545
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3021)
CpG islands
(count:1220)
Chromatin interactive
region (count:100)
LncRNA
region (count:26)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3021 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:104224778-104225327	K562	blood:	n/a	n/a
2	ARID3A	chr9:104199996-104200599	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:104194966-104196022	HepG2	liver:	n/a	chr9:104195921-104195937 chr9:104195920-104195936
4	ARID3A	chr9:104204696-104205484	HepG2	liver:	n/a	n/a
5	ARID3A	chr9:104292514-104292714	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:104227683-104227970	K562	blood:	n/a	n/a
7	ARID3A	chr9:104295942-104296283	K562	blood:	n/a	n/a
8	ARID3A	chr9:104183824-104184424	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:104211633-104211832	K562	blood:	n/a	n/a
10	ARID3A	chr9:104221326-104221658	HepG2	liver:	n/a	n/a
11	ARID3A	chr9:104207280-104208125	HepG2	liver:	n/a	n/a
12	ATF1	chr9:104224865-104225348	K562	blood:	n/a	n/a
13	ATF1	chr9:104227631-104227968	K562	blood:	n/a	n/a
14	ATF1	chr9:104295646-104296267	K562	blood:	n/a	n/a
15	ATF1	chr9:104243643-104243914	K562	blood:	n/a	n/a
16	ATF2	chr9:104211545-104211916	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr9:104224811-104225151	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr9:104292401-104292766	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr9:104292374-104292716	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr9:104221166-104221629	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr9:104249360-104249813	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF3	chr9:104248128-104248468	K562	blood:	n/a	n/a
23	ATF3	chr9:104249337-104249550	K562	blood:	n/a	n/a
24	ATF3	chr9:104227629-104227994	K562	blood:	n/a	n/a
25	ATF3	chr9:104249333-104249674	H1-hESC	embryonic stem cell:	n/a	chr9:104249533-104249553
26	ATF3	chr9:104224849-104225153	K562	blood:	n/a	n/a
27	BACH1	chr9:104249369-104249771	H1-hESC	embryonic stem cell:	n/a	n/a
28	BACH1	chr9:104296093-104296404	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr9:104224831-104225167	K562	blood:	n/a	n/a
30	BACH1	chr9:104249599-104249774	K562	blood:	n/a	n/a
31	BACH1	chr9:104211500-104211895	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr9:104224409-104225425	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr9:104286436-104286549	H1-hESC	embryonic stem cell:	n/a	n/a
34	BATF	chr9:104273117-104273328	GM12878	blood:	n/a	chr9:104273227-104273238
35	BATF	chr9:104225732-104225964	GM12878	blood:	n/a	n/a
36	BATF	chr9:104311800-104312003	GM12878	blood:	n/a	n/a
37	BCL3	chr9:104228458-104228698	GM12878	blood:	n/a	n/a
38	BCL3	chr9:104211493-104212025	A549	lung:	n/a	chr9:104211667-104211675
39	BCLAF1	chr9:104292317-104292714	GM12878	blood:	n/a	n/a
40	BHLHE40	chr9:104292414-104292743	GM12878	blood:	n/a	n/a
41	BHLHE40	chr9:104211362-104211952	K562	blood:	n/a	chr9:104211458-104211474 chr9:104211497-104211513 chr9:104211492-104211508
42	BHLHE40	chr9:104295571-104296450	GM12878	blood:	n/a	n/a
43	BHLHE40	chr9:104211319-104211633	GM12878	blood:	n/a	chr9:104211458-104211474 chr9:104211497-104211513 chr9:104211492-104211508
44	BHLHE40	chr9:104249464-104249481	K562	blood:	n/a	n/a
45	BHLHE40	chr9:104295750-104296587	HepG2	liver:	n/a	n/a
46	BHLHE40	chr9:104295506-104296590	K562	blood:	n/a	n/a
47	BHLHE40	chr9:104295886-104296435	A549	lung:	n/a	n/a
48	BHLHE40	chr9:104248241-104248581	K562	blood:	n/a	n/a
49	BHLHE40	chr9:104299234-104299490	K562	blood:	n/a	n/a
50	BHLHE40	chr9:104227748-104227900	K562	blood:	n/a	n/a

(count:1220 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:104249548-104249598	HRCEpiC	kidney:	n/a
2	chr9:104292242-104292292	SK-N-SH	brain:	n/a
3	chr9:104198262-104198312	Hela-S3	cervix:	n/a
4	chr9:104295276-104295326	SAEC	small airway:	n/a
5	chr9:104296226-104296276	LNCaP	prostate:	n/a
6	chr9:104211410-104211460	HCPEpiC	choroid plexus:	n/a
7	chr9:104292242-104292292	HMEC	breast:	n/a
8	chr9:104294981-104295031	Jurkat	blood:	n/a
9	chr9:104186172-104186222	BJ	skin:	n/a
10	chr9:104295276-104295326	LNCaP	prostate:	n/a
11	chr9:104248926-104248976	HCT-116	colon:	n/a
12	chr9:104295632-104295682	IMR90	lung:	fetal
13	chr9:104211410-104211460	NH-A	brain:	n/a
14	chr9:104248926-104248976	CMK	blood:	n/a
15	chr9:104198262-104198312	PrEC	prostate:	n/a
16	chr9:104211410-104211460	PANC-1	pancreas:	n/a
17	chr9:104186172-104186222	HEEpiC	esophagus:	n/a
18	chr9:104238593-104238643	AG04450	lung:	fetal
19	chr9:104197675-104197725	MCF-7	breast:	n/a
20	chr9:104249490-104249540	H1-hESC	embryonic stem cell:	embryo
21	chr9:104197886-104197936	Hela-S3	cervix:	n/a
22	chr9:104249548-104249598	HL-60	blood:	n/a
23	chr9:104249936-104249986	A549	lung:	n/a
24	chr9:104197886-104197936	NB4	blood:	n/a
25	chr9:104237697-104237747	HRE	kidney:	n/a
26	chr9:104197886-104197936	A549	lung:	n/a
27	chr9:104249490-104249540	NHDF-neo	bronchial:	n/a
28	chr9:104305608-104305658	HUVEC	blood vessel:	n/a
29	chr9:104193952-104194002	GM12878	blood:	n/a
30	chr9:104248926-104248976	AG09319	gingival:	n/a
31	chr9:104249490-104249540	K562	blood:	n/a
32	chr9:104197675-104197725	NH-A	brain:	n/a
33	chr9:104197886-104197936	SK-N-SH	brain:	n/a
34	chr9:104295632-104295682	HRE	kidney:	n/a
35	chr9:104193952-104194002	AG04450	lung:	fetal
36	chr9:104197675-104197725	PrEC	prostate:	n/a
37	chr9:104248926-104248976	PFSK-1	brain:	n/a
38	chr9:104238593-104238643	A549	lung:	n/a
39	chr9:104211410-104211460	H1-hESC	embryonic stem cell:	embryo
40	chr9:104198262-104198312	HL-60	blood:	n/a
41	chr9:104305608-104305658	ECC-1	luminal epithelium:	n/a
42	chr9:104249548-104249598	HEK293	kidney:	embryo
43	chr9:104237697-104237747	HL-60	blood:	n/a
44	chr9:104198262-104198312	HRE	kidney:	n/a
45	chr9:104198262-104198312	HCM	heart:	n/a
46	chr9:104295632-104295682	GM19239	blood:	n/a
47	chr9:104198262-104198312	Caco-2	colon:	n/a
48	chr9:104211410-104211460	HUVEC	blood vessel:	n/a
49	chr9:104249936-104249986	BE2_C	brain:	n/a
50	chr9:104294981-104295031	Hepatocyte	liver:	n/a

(count:100 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:104226892..104228195-chr9:104292114..104293047,7	MCF-7	breast:
2	chr9:104295436..104297637-chr9:104304728..104307313,2	K562	blood:
3	chr9:104226892..104228195-chr9:104292114..104293047,7	MCF-7	breast:
4	chr9:104192637..104194566-chr9:104195884..104197639,2	MCF-7	breast:
5	chr9:104236917..104238965-chr9:104238999..104241326,2	K562	blood:
6	chr9:104221002..104221801-chr9:104329610..104330484,3	MCF-7	breast:
7	chr9:104165233..104170505-chr9:104171045..104175682,8	MCF-7	breast:
8	chr9:104302143..104304850-chr9:104306401..104308642,2	K562	blood:
9	chr9:104232654..104234512-chr9:104236570..104239757,3	K562	blood:
10	chr9:104220969..104222009-chr9:104292098..104293000,3	K562	blood:
11	chr9:104237414..104239742-chr9:104246128..104247680,2	K562	blood:
12	chr9:104224910..104226777-chr9:104240738..104243531,2	K562	blood:
13	chr9:104221036..104221738-chr9:104355766..104356658,2	MCF-7	breast:
14	chr9:104234812..104237553-chr9:104247151..104249445,2	MCF-7	breast:
15	chr9:104171442..104174138-chr9:104174646..104177184,3	MCF-7	breast:
16	chr9:104246363..104248786-chr9:104290917..104293044,2	K562	blood:
17	chr9:104220056..104222734-chr9:104292272..104293989,2	K562	blood:
18	chr9:104221027..104221969-chr9:104291863..104293035,11	MCF-7	breast:
19	chr9:104221066..104221882-chr9:107505389..107506114,2	K562	blood:
20	chr9:104171470..104172972-chr9:104174502..104177439,2	K562	blood:
21	chr9:104171470..104172972-chr9:104174502..104177439,2	K562	blood:
22	chr9:104230694..104236463-chr9:104246967..104249431,5	K562	blood:
23	chr9:104171442..104174138-chr9:104174646..104177184,3	MCF-7	breast:
24	chr9:104210777..104212299-chr9:104292128..104293102,7	MCF-7	breast:
25	chr9:104175126..104176878-chr9:104177737..104179580,2	MCF-7	breast:
26	chr9:104192560..104194189-chr9:104200149..104202095,2	K562	blood:
27	chr9:104212462..104214116-chr9:104215702..104218126,2	MCF-7	breast:
28	chr9:104192560..104194189-chr9:104200149..104202095,2	K562	blood:
29	chr20:35233831..35234522-chr9:104248273..104248833,2	Hela-S3	cervix:
30	chr9:104171015..104173390-chr9:104201738..104204667,2	K562	blood:
31	chr9:104219436..104220096-chr9:104292310..104293060,2	MCF-7	breast:
32	chr9:104191772..104193285-chr9:104196452..104198331,2	K562	blood:
33	chr9:103476641..103477292-chr9:104292118..104293044,2	K562	blood:
34	chr9:104221027..104221969-chr9:104291863..104293035,11	MCF-7	breast:
35	chr9:104231072..104233238-chr9:104234059..104235841,2	MCF-7	breast:
36	chr9:104224910..104226777-chr9:104240738..104243531,2	K562	blood:
37	chr9:104220969..104222009-chr9:104292098..104293000,3	K562	blood:
38	chr9:104160996..104162683-chr9:104210087..104212007,2	K562	blood:
39	chr9:104304678..104307406-chr9:104312351..104313863,2	MCF-7	breast:
40	chr9:104159548..104162633-chr9:104207516..104209377,3	MCF-7	breast:
41	chr9:104153060..104154833-chr9:104173382..104175911,2	MCF-7	breast:
42	chr9:104227401..104228428-chr9:104292031..104293031,5	K562	blood:
43	chr9:104191772..104193285-chr9:104196452..104198331,2	K562	blood:
44	chr9:104189039..104190592-chr9:104201442..104204018,2	K562	blood:
45	chr9:104167820..104171241-chr9:104178855..104183117,4	K562	blood:
46	chr9:104239622..104242586-chr9:104248313..104251248,3	K562	blood:
47	chr9:104160949..104162500-chr9:104190805..104192507,2	MCF-7	breast:
48	chr9:104160683..104161236-chr9:104211196..104212187,2	MCF-7	breast:
49	chr9:104208004..104209865-chr9:104292464..104295242,2	K562	blood:
50	chr9:104246363..104248786-chr9:104290917..104293044,2	K562	blood:

(count:26 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF20-1	chr9:104231492-104231902	NONHSAT133734
2	lnc-RNF20-1	chr9:104242122-104242215	NONHSAT133734
3	lnc-ALDOB-1	chr9:104263925-104264167	NONHSAT133741
4	lnc-RNF20-1	chr9:104231631-104231902	NONHSAT133737
5	lnc-ZNF189-2	chr9:104181299-104185086	NONHSAT133730
6	lnc-RNF20-1	chr9:104242045-104242205	NONHSAT133740
7	lnc-RNF20-1	chr9:104237158-104237324	ENSG00000225376.1
8	lnc-RNF20-1	chr9:104243645-104244328	NONHSAT133740
9	lnc-C9orf125-2	chr9:104235442-104237132	NONHSAT133739
10	lnc-C9orf125-1	chr9:104295735-104295819	NONHSAT133742
11	lnc-RNF20-1	chr9:104231492-104231902	NONHSAT133735
12	lnc-RNF20-1	chr9:104243645-104243784	ENSG00000225376.1
13	lnc-RNF20-1	chr9:104242122-104242205	NONHSAT133735
14	lnc-RNF20-1	chr9:104242122-104242205	ENSG00000225376.1
15	lnc-RNF20-1	chr9:104243645-104244538	NONHSAT133735
16	lnc-RNF20-1	chr9:104242122-104242205	NONHSAT133738
17	lnc-RNF20-1	chr9:104243645-104243784	ENSG00000225376.1
18	lnc-RNF20-1	chr9:104231632-104231727	NONHSAT133738
19	lnc-RNF20-1	chr9:104243645-104243784	ENSG00000225376.1
20	lnc-RNF20-1	chr9:104230744-104230890	ENSG00000225376.1
21	lnc-RNF20-1	chr9:104242122-104242205	ENSG00000225376.1
22	lnc-RNF20-1	chr9:104231661-104231902	ENSG00000225376.1
23	lnc-RNF20-1	chr9:104243645-104244328	NONHSAT133738
24	lnc-RNF20-1	chr9:104231604-104231902	ENSG00000225376.1
25	lnc-C9orf125-1	chr9:104293517-104293841	NONHSAT133742
26	lnc-RNF20-1	chr9:104235485-104236343	NONHSAT133737

No data

Variant related genes	Relation type
ALDOB	TF binding region
ENSG00000270982	TF binding region
ENSG00000233055	TF binding region
RNF20	TF binding region
ENSG00000225376	TF binding region
ENSG00000265068	TF binding region
TMEM246	TF binding region
ALDOB	CpG island
ENSG00000270982	CpG island
ENSG00000233055	CpG island
RNF20	CpG island
ENSG00000225376	CpG island
ENSG00000265068	CpG island
TMEM246	CpG island
ENSG00000159388	chromatin interactions
ENSG00000136870	chromatin interactions
ENSG00000165152	chromatin interactions
ENSG00000136897	chromatin interactions
ENSG00000155827	chromatin interactions
ENSG00000101084	chromatin interactions
ENSG00000270982	chromatin interactions
ENSG00000136872	chromatin interactions
ENSG00000233791	chromatin interactions
ENSG00000225376	chromatin interactions

Extended variants
information (count: 5790 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:5790 , 50 per page) page: 1 2 3 4 5 6 7 ... 116

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546577	chr9:104172936-104172937	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs563580397	chr9:104172984-104172985	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs570281718	chr9:104172985-104172986	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs199799115	chr9:104173017-104173018	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs552537126	chr9:104173020-104173021	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs566280706	chr9:104173081-104173082	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs535202237	chr9:104173086-104173087	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs555116021	chr9:104173110-104173111	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs568550204	chr9:104173112-104173113	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs141762289	chr9:104173124-104173125	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs78730373	chr9:104173172-104173173	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs76805063	chr9:104173199-104173200	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs545295054	chr9:104173206-104173207	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs558528871	chr9:104173238-104173239	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs77455990	chr9:104173286-104173287	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs73494957	chr9:104173299-104173300	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs563000793	chr9:104173343-104173344	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs188255642	chr9:104173345-104173346	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs574174780	chr9:104173350-104173351	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs150470621	chr9:104173435-104173436	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs563286050	chr9:104173436-104173437	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs531965583	chr9:104173449-104173450	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs115352953	chr9:104173523-104173524	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs560052834	chr9:104173525-104173526	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs528547772	chr9:104173590-104173591	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs528728728	chr9:104173601-104173602	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs547621359	chr9:104173602-104173603	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs112383429	chr9:104173606-104173607	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs548776170	chr9:104173625-104173626	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs559577128	chr9:104173645-104173646	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs537541190	chr9:104173695-104173696	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs550754600	chr9:104173712-104173713	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs145419796	chr9:104173764-104173765	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs539425295	chr9:104173842-104173843	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs2028031	chr9:104173843-104173844	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs571994665	chr9:104173851-104173852	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs534537610	chr9:104173852-104173853	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs554341368	chr9:104173883-104173884	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs574234534	chr9:104173886-104173887	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs149024178	chr9:104173913-104173914	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs563209677	chr9:104173927-104173928	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs576787247	chr9:104173938-104173939	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs200399837	chr9:104173939-104173940	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs143020818	chr9:104173959-104173960	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs560115795	chr9:104173975-104173976	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs544384163	chr9:104174011-104174012	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs374576578	chr9:104174026-104174027	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs548838212	chr9:104174063-104174064	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs562274581	chr9:104174086-104174087	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs191180154	chr9:104174102-104174103	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Recurrent pregnancy loss	19789632	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3327 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104162800-104173800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:104163000-104173000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr9:104163200-104174000	ZNF genes & repeats	Fetal Lung	lung
4	chr9:104163400-104174000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:104163600-104173600	ZNF genes & repeats	Ovary	ovary
6	chr9:104164000-104173600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:104164400-104173400	ZNF genes & repeats	Colon Smooth Muscle	Colon
8	chr9:104164600-104173600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:104164600-104173800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:104164800-104173400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr9:104164800-104174200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:104164800-104174200	ZNF genes & repeats	Brain Hippocampus Middle	brain
13	chr9:104164800-104175400	ZNF genes & repeats	Fetal Muscle Leg	muscle
14	chr9:104165000-104173800	ZNF genes & repeats	Liver	Liver
15	chr9:104165400-104173200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr9:104165400-104173600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
17	chr9:104165400-104173600	ZNF genes & repeats	HSMM	muscle
18	chr9:104165400-104176200	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr9:104165600-104178200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr9:104166200-104173000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
21	chr9:104166400-104173000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:104167000-104173200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
23	chr9:104167000-104174000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr9:104167200-104173200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:104167400-104173000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr9:104167400-104173200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr9:104167400-104173400	ZNF genes & repeats	Psoas Muscle	Psoas
28	chr9:104167400-104173600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
29	chr9:104167600-104173600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:104169000-104173600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
31	chr9:104169000-104173600	ZNF genes & repeats	Brain Germinal Matrix	brain
32	chr9:104169800-104173600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
33	chr9:104172000-104173600	Enhancers	HepG2	liver
34	chr9:104172000-104176000	Weak transcription	Aorta	Aorta
35	chr9:104172000-104177800	Weak transcription	Lung	lung
36	chr9:104172000-104179200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr9:104172000-104179400	Weak transcription	Pancreas	Pancrea
38	chr9:104172000-104180800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:104172800-104173200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr9:104172800-104175000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:104172800-104175200	Weak transcription	Fetal Brain Male	brain
42	chr9:104172800-104180800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:104172800-104181200	Weak transcription	Fetal Heart	heart
44	chr9:104172800-104187000	Weak transcription	Left Ventricle	heart
45	chr9:104173200-104173600	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr9:104173600-104175200	Weak transcription	Ovary	ovary
47	chr9:104173600-104175400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:104173600-104177600	Weak transcription	HepG2	liver
49	chr9:104173600-104180400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr9:104174000-104175000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links