Variant report

Variant	rs531965583
Chromosome Location	chr9:104173449-104173450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104153060..104154833-chr9:104173382..104175911,2	MCF-7	breast:
2	chr9:104165233..104170505-chr9:104171045..104175682,8	MCF-7	breast:
3	chr9:104171442..104174138-chr9:104174646..104177184,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104162800-104173800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:104163200-104174000	ZNF genes & repeats	Fetal Lung	lung
3	chr9:104163400-104174000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:104163600-104173600	ZNF genes & repeats	Ovary	ovary
5	chr9:104164000-104173600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:104164600-104173600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:104164600-104173800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:104164800-104174200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:104164800-104174200	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr9:104164800-104175400	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr9:104165000-104173800	ZNF genes & repeats	Liver	Liver
12	chr9:104165400-104173600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
13	chr9:104165400-104173600	ZNF genes & repeats	HSMM	muscle
14	chr9:104165400-104176200	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr9:104165600-104178200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr9:104167000-104174000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr9:104167400-104173600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
18	chr9:104167600-104173600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:104169000-104173600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr9:104169000-104173600	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr9:104169800-104173600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
22	chr9:104172000-104173600	Enhancers	HepG2	liver
23	chr9:104172000-104176000	Weak transcription	Aorta	Aorta
24	chr9:104172000-104177800	Weak transcription	Lung	lung
25	chr9:104172000-104179200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:104172000-104179400	Weak transcription	Pancreas	Pancrea
27	chr9:104172000-104180800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:104172800-104175000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:104172800-104175200	Weak transcription	Fetal Brain Male	brain
30	chr9:104172800-104180800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:104172800-104181200	Weak transcription	Fetal Heart	heart
32	chr9:104172800-104187000	Weak transcription	Left Ventricle	heart
33	chr9:104173200-104173600	Strong transcription	Muscle Satellite Cultured Cells	--

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