Variant report

Variant	rs10991829
Chromosome Location	chr9:93970127-93970128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93957714..93959439-chr9:93968900..93970567,2	MCF-7	breast:
2	chr9:93969893..93972438-chr9:93978667..93980846,2	K562	blood:
3	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
4	chr9:93964083..93965933-chr9:93969852..93971912,2	K562	blood:
5	chr9:93964370..93966727-chr9:93969107..93971883,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AUH-6	chr9:93968457-93972581	ENSG00000273381.1

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10820842	0.83[EUR][1000 genomes]
rs10991823	0.82[AMR][1000 genomes]
rs10991891	1.00[CEU][hapmap]
rs10991899	0.89[CEU][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]
rs6479333	0.89[CEU][hapmap]
rs7045608	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7047354	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9785224	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9785225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10991829	CENPP	cis	cerebellum	SCAN
rs10991829	FGD3	cis	parietal	SCAN
rs10991829	FAM120A	cis	parietal	SCAN

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:93968600-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:93968800-93970200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:93968800-93970400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:93968800-93970400	Enhancers	NHEK	skin
6	chr9:93968800-93971000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:93969200-93971000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:93969200-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:93969200-93971400	Enhancers	Fetal Intestine Large	intestine
10	chr9:93969400-93970200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:93969400-93970200	Enhancers	Primary T cells from cord blood	blood
12	chr9:93969400-93970200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:93969400-93970200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:93969400-93970400	Enhancers	NHLF	lung
15	chr9:93969400-93970800	Enhancers	HSMMtube	muscle
16	chr9:93969400-93971200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr9:93969400-93971400	Enhancers	Placenta	Placenta
18	chr9:93969400-93971600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr9:93969400-93971800	Enhancers	Primary B cells from peripheral blood	blood
20	chr9:93969400-93972200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:93969600-93970200	Enhancers	Thymus	Thymus
22	chr9:93969600-93970400	Enhancers	Aorta	Aorta
23	chr9:93969600-93970400	Enhancers	Fetal Thymus	thymus
24	chr9:93969600-93970600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:93969600-93970600	Enhancers	Adipose Nuclei	Adipose
26	chr9:93969600-93970800	Enhancers	Brain Angular Gyrus	brain
27	chr9:93969600-93970800	Enhancers	HMEC	breast
28	chr9:93969600-93971000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:93969600-93971000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:93969600-93971000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr9:93969600-93971000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:93969600-93971000	Flanking Active TSS	Liver	Liver
33	chr9:93969600-93971000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:93969600-93971000	Enhancers	Fetal Heart	heart
35	chr9:93969600-93971200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr9:93969600-93971200	Enhancers	Fetal Lung	lung
37	chr9:93969600-93971400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:93969600-93971400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr9:93969600-93971400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr9:93969600-93971400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr9:93969600-93971400	Enhancers	Esophagus	oesophagus
42	chr9:93969600-93971400	Enhancers	Fetal Intestine Small	intestine
43	chr9:93969600-93971400	Enhancers	Left Ventricle	heart
44	chr9:93969600-93971400	Enhancers	Lung	lung
45	chr9:93969600-93971400	Enhancers	Right Ventricle	heart
46	chr9:93969600-93971400	Enhancers	Small Intestine	intestine
47	chr9:93969600-93971400	Enhancers	Spleen	Spleen
48	chr9:93969600-93971400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr9:93969600-93971600	Enhancers	Psoas Muscle	Psoas
50	chr9:93969600-93971600	Enhancers	Right Atrium	heart

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