Variant report

Variant	rs10991823
Chromosome Location	chr9:93957251-93957252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93876958..93880212-chr9:93954680..93957779,3	K562	blood:
2	chr9:93954564..93957663-chr9:94184637..94187181,3	MCF-7	breast:
3	chr9:93956099..93958842-chr9:93964995..93966534,2	MCF-7	breast:
4	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
5	chr9:93954745..93957356-chr9:93959373..93965297,8	MCF-7	breast:
6	chr9:93956701..93958239-chr9:93975872..93977409,2	K562	blood:
7	chr9:93956736..93959501-chr9:93969407..93972748,3	K562	blood:
8	chr9:93953851..93958747-chr9:94181568..94185373,5	K562	blood:
9	chr9:93956551..93958888-chr9:94036316..94038161,2	K562	blood:
10	chr9:93955512..93957645-chr9:94181568..94183093,2	K562	blood:
11	chr9:93956017..93958236-chr9:93971248..93973201,2	K562	blood:
12	chr9:93938945..93942205-chr9:93953498..93957392,4	K562	blood:
13	chr9:91002684..91004855-chr9:93955430..93957716,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000273381	Chromatin interaction
ENSG00000165030	Chromatin interaction
ENSG00000106723	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10820840	0.84[ASN][1000 genomes]
rs10820842	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10991802	0.83[ASN][1000 genomes]
rs10991803	0.81[ASN][1000 genomes]
rs10991812	0.88[ASN][1000 genomes]
rs10991815	0.88[ASN][1000 genomes]
rs10991829	0.82[AMR][1000 genomes]
rs10991851	0.91[ASN][1000 genomes]
rs10991866	0.93[ASN][1000 genomes]
rs10991873	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991891	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991898	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10991899	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10991905	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6479333	0.87[ASN][1000 genomes]
rs7020676	0.82[ASN][1000 genomes]
rs7021269	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7035286	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7045608	0.81[EUR][1000 genomes]
rs7047354	0.81[EUR][1000 genomes]
rs9785224	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9785225	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93941000-93957400	Weak transcription	Gastric	stomach
2	chr9:93954000-93959200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr9:93955000-93960400	Enhancers	Fetal Heart	heart
4	chr9:93955200-93957400	Active TSS	Liver	Liver
5	chr9:93955400-93957600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr9:93955400-93957800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr9:93955600-93958000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr9:93955600-93958200	Flanking Active TSS	HepG2	liver
9	chr9:93956200-93957400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:93956200-93957400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr9:93956200-93957400	Flanking Active TSS	K562	blood
12	chr9:93956200-93957600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr9:93956200-93957800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:93956200-93959000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:93956200-93959200	Enhancers	Lung	lung
16	chr9:93956400-93958000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:93956400-93958000	Flanking Active TSS	Hela-S3	cervix
18	chr9:93956400-93958200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr9:93956400-93958600	Weak transcription	Ovary	ovary
20	chr9:93956400-93961600	Enhancers	Fetal Intestine Large	intestine
21	chr9:93956400-93963200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr9:93956600-93957600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr9:93956600-93957600	Weak transcription	Right Atrium	heart
24	chr9:93956600-93957600	Weak transcription	Spleen	Spleen
25	chr9:93956600-93957800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:93956600-93958400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:93956600-93958400	Enhancers	Fetal Thymus	thymus
28	chr9:93956600-93958600	Weak transcription	HMEC	breast
29	chr9:93956600-93958800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:93956600-93958800	Weak transcription	Brain Substantia Nigra	brain
31	chr9:93956600-93959000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:93956600-93959000	Enhancers	Right Ventricle	heart
33	chr9:93956600-93959000	Enhancers	Small Intestine	intestine
34	chr9:93956600-93959000	Enhancers	A549	lung
35	chr9:93956600-93959200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:93956600-93959200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:93956600-93959200	Enhancers	Left Ventricle	heart
38	chr9:93956600-93959200	Enhancers	Pancreas	Pancrea
39	chr9:93956600-93959600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:93956600-93959800	Enhancers	Placenta	Placenta
41	chr9:93956600-93960600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:93956600-93960600	Enhancers	Fetal Muscle Leg	muscle
43	chr9:93956600-93961000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:93956600-93961200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:93956600-93961200	Enhancers	Fetal Lung	lung
46	chr9:93956600-93961200	Enhancers	NHDF-Ad	bronchial
47	chr9:93956600-93961400	Enhancers	Colon Smooth Muscle	Colon
48	chr9:93956600-93961400	Enhancers	Fetal Intestine Small	intestine
49	chr9:93956600-93962000	Weak transcription	Aorta	Aorta
50	chr9:93956600-93962600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links