Variant report

Variant	rs7021269
Chromosome Location	chr9:94090842-94090843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94083958..94089590-chr9:94090031..94094657,6	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10820842	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991823	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991851	0.88[ASN][1000 genomes]
rs10991866	0.91[ASN][1000 genomes]
rs10991873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991898	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991899	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991905	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479333	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7020676	0.93[ASN][1000 genomes]
rs7035286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
3	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
4	chr9:94058800-94091800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:94065400-94101400	Weak transcription	K562	blood
8	chr9:94065600-94091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
10	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:94066800-94104000	Weak transcription	HSMM	muscle
12	chr9:94067800-94094400	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:94069200-94096200	Weak transcription	Psoas Muscle	Psoas
14	chr9:94072800-94101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:94074600-94103800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:94075800-94104200	Weak transcription	NHEK	skin
17	chr9:94080800-94101000	Weak transcription	Fetal Kidney	kidney
18	chr9:94080800-94102400	Weak transcription	Colonic Mucosa	Colon
19	chr9:94081000-94101000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:94082200-94094800	Weak transcription	Fetal Heart	heart
21	chr9:94082200-94095000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:94082200-94104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr9:94084400-94104200	Weak transcription	NHDF-Ad	bronchial
24	chr9:94087800-94103600	Weak transcription	A549	lung
25	chr9:94088000-94091000	Strong transcription	Primary T cells from cord blood	blood
26	chr9:94088200-94092600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:94088600-94099800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:94089200-94091000	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr9:94089200-94091800	Strong transcription	Fetal Lung	lung
30	chr9:94089200-94093600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:94089200-94093800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:94089200-94095000	Weak transcription	Stomach Mucosa	stomach
33	chr9:94089400-94091000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:94089400-94093800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr9:94089600-94091000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chr9:94089600-94091000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr9:94089600-94091000	ZNF genes & repeats	Fetal Muscle Leg	muscle
38	chr9:94089800-94091000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:94090000-94092800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:94090000-94095000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:94090000-94103400	Weak transcription	Brain Angular Gyrus	brain
42	chr9:94090200-94091000	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr9:94090200-94094800	Weak transcription	Right Ventricle	heart
44	chr9:94090200-94095000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr9:94090200-94099600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:94090200-94101400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:94090200-94104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr9:94090400-94091000	Strong transcription	Fetal Intestine Large	intestine
50	chr9:94090400-94091000	Weak transcription	Placenta	Placenta

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