Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92887879..92890112-chr9:92900517..92902714,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10481716	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992305	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10992307	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10992310	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12003087	1.00[AFR][1000 genomes]
rs12340457	1.00[AFR][1000 genomes]
rs12340868	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12342443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12345029	1.00[AFR][1000 genomes]
rs12345191	1.00[ASW][hapmap]
rs12349074	1.00[AFR][1000 genomes]
rs12350417	1.00[AFR][1000 genomes]
rs437997	1.00[AFR][1000 genomes]
rs55988602	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62560130	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs62560131	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72741339	1.00[AFR][1000 genomes]
rs72755094	1.00[AFR][1000 genomes]
rs72755095	1.00[AFR][1000 genomes]
rs72756923	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72756927	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72756928	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92897600-92902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:92900200-92901200	Enhancers	Fetal Muscle Leg	muscle
3	chr9:92900200-92901200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:92900400-92905200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search: