Variant report

Variant	rs12340457
Chromosome Location	chr9:92977894-92977895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10992245	1.00[AFR][1000 genomes]
rs10992247	1.00[AFR][1000 genomes]
rs10992305	1.00[AFR][1000 genomes]
rs10992307	1.00[AFR][1000 genomes]
rs10992310	1.00[AFR][1000 genomes]
rs12003087	1.00[AFR][1000 genomes]
rs12340868	1.00[AFR][1000 genomes]
rs12342443	1.00[AFR][1000 genomes]
rs12345029	1.00[AFR][1000 genomes]
rs12349074	1.00[AFR][1000 genomes]
rs12350417	1.00[AFR][1000 genomes]
rs437997	1.00[AFR][1000 genomes]
rs55988602	1.00[AFR][1000 genomes]
rs62560130	1.00[AFR][1000 genomes]
rs62560131	1.00[AFR][1000 genomes]
rs72741339	1.00[AFR][1000 genomes]
rs72755094	1.00[AFR][1000 genomes]
rs72755095	1.00[AFR][1000 genomes]
rs72756923	1.00[AFR][1000 genomes]
rs72756927	1.00[AFR][1000 genomes]
rs72756928	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv969776	chr9:92946057-92998706	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv968726	chr9:92968466-92998706	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92976400-92981600	Weak transcription	Primary B cells from peripheral blood	blood

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