Variant report

Variant	rs10992558
Chromosome Location	chr9:95731040-95731041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95730012..95732538-chr9:95736889..95739219,2	K562	blood:
2	chr9:95725342..95729207-chr9:95729946..95733070,3	K562	blood:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4147166	0.89[ASN][1000 genomes]
rs4587396	0.89[ASN][1000 genomes]
rs59042985	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:95726600-95731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:95726800-95731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:95726800-95731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:95726800-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:95728000-95732400	Weak transcription	Left Ventricle	heart
9	chr9:95728000-95733800	Weak transcription	Right Atrium	heart
10	chr9:95728200-95731200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:95728200-95739600	Weak transcription	Fetal Stomach	stomach
12	chr9:95728400-95731200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:95728400-95731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:95728400-95732400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:95728600-95732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:95728600-95732200	Weak transcription	Brain Anterior Caudate	brain
17	chr9:95728600-95732600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:95728600-95733200	Genic enhancers	Spleen	Spleen
19	chr9:95728800-95731200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:95728800-95731400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:95728800-95732800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:95728800-95732800	Weak transcription	Brain Substantia Nigra	brain
23	chr9:95728800-95733600	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:95728800-95733800	Genic enhancers	Primary B cells from peripheral blood	blood
25	chr9:95728800-95739400	Weak transcription	Gastric	stomach
26	chr9:95728800-95739600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:95728800-95740600	Weak transcription	Small Intestine	intestine
28	chr9:95729000-95731200	Weak transcription	Pancreas	Pancrea
29	chr9:95729000-95731800	Weak transcription	Esophagus	oesophagus
30	chr9:95729000-95731800	Weak transcription	Lung	lung
31	chr9:95729000-95732000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:95729000-95733800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:95729000-95734000	Genic enhancers	Primary monocytes fromperipheralblood	blood
34	chr9:95729000-95735000	Weak transcription	Adipose Nuclei	Adipose
35	chr9:95729000-95739400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:95729000-95741400	Weak transcription	Right Ventricle	heart
37	chr9:95729200-95731600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:95729200-95733800	Genic enhancers	Thymus	Thymus
39	chr9:95729200-95734000	Genic enhancers	Fetal Thymus	thymus
40	chr9:95729200-95739200	Weak transcription	Colonic Mucosa	Colon
41	chr9:95729400-95732200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr9:95729400-95733800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr9:95729600-95734200	Genic enhancers	Primary B cells from cord blood	blood
44	chr9:95729800-95731200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr9:95729800-95731600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr9:95730000-95732000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:95730000-95733600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr9:95730200-95731400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:95730200-95731400	Enhancers	GM12878-XiMat	blood
50	chr9:95730200-95732400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links