Variant report

Variant	rs4147166
Chromosome Location	chr9:95727883-95727884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95726879..95729699-chr9:95735044..95738591,3	K562	blood:
2	chr9:95726594..95728723-chr9:95769310..95772276,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10992558	0.89[ASN][1000 genomes]
rs16908655	0.93[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs16908676	1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs4587396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042985	0.83[ASN][1000 genomes]
rs59834353	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73651341	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:95725400-95728600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr9:95725600-95729200	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr9:95725800-95728000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr9:95725800-95728400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr9:95725800-95728800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:95725800-95729000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:95725800-95729200	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr9:95726000-95728200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr9:95726000-95728200	Active TSS	Duodenum Mucosa	Duodenum
13	chr9:95726000-95728400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:95726000-95728400	Flanking Active TSS	HepG2	liver
15	chr9:95726000-95728600	Active TSS	Rectal Smooth Muscle	rectum
16	chr9:95726000-95728800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:95726000-95728800	Active TSS	Rectal Mucosa Donor 31	rectum
18	chr9:95726200-95728000	Active TSS	Colonic Mucosa	Colon
19	chr9:95726200-95728000	Active TSS	Thymus	Thymus
20	chr9:95726200-95728200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:95726200-95728400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr9:95726200-95728600	Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr9:95726200-95728800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:95726400-95728200	Active TSS	Primary T cells from cord blood	blood
25	chr9:95726400-95728400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:95726400-95729000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr9:95726400-95729000	Active TSS	Esophagus	oesophagus
28	chr9:95726400-95730200	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr9:95726600-95728000	Active TSS	Brain Anterior Caudate	brain
30	chr9:95726600-95728000	Active TSS	Right Atrium	heart
31	chr9:95726600-95728200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:95726600-95728200	Active TSS	Brain Substantia Nigra	brain
33	chr9:95726600-95728200	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr9:95726600-95728400	Active TSS	Pancreas	Pancrea
35	chr9:95726600-95728400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
36	chr9:95726600-95728400	Active TSS	Spleen	Spleen
37	chr9:95726600-95728600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:95726600-95728600	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr9:95726600-95728600	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr9:95726600-95728800	Active TSS	Gastric	stomach
41	chr9:95726600-95728800	Active TSS	Sigmoid Colon	Sigmoid Colon
42	chr9:95726600-95728800	Active TSS	Small Intestine	intestine
43	chr9:95726600-95729000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:95726600-95729000	Active TSS	Liver	Liver
45	chr9:95726600-95729000	Active TSS	Placenta	Placenta
46	chr9:95726600-95730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:95726600-95731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:95726800-95728000	Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr9:95726800-95728400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr9:95726800-95728800	Flanking Active TSS	GM12878-XiMat	blood

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