Variant report

Variant	rs59834353
Chromosome Location	chr9:95724649-95724650
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr9:95724192-95724694	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95722390..95724791-chr9:95916678..95919347,2	MCF-7	breast:

Variant related genes	Relation type
FGD3	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16908655	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16908676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147166	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4587396	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73651341	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr9:95717200-95724800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr9:95717200-95725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:95719600-95725800	Weak transcription	HepG2	liver
6	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:95721600-95725800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr9:95721800-95725800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:95722200-95726000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr9:95722400-95725600	Weak transcription	Thymus	Thymus
11	chr9:95723000-95725600	Enhancers	Primary T cells from cord blood	blood
12	chr9:95723200-95726000	Enhancers	Primary B cells from peripheral blood	blood
13	chr9:95723800-95724800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:95723800-95725600	Enhancers	Primary B cells from cord blood	blood
15	chr9:95724000-95724800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr9:95724200-95724800	Enhancers	Brain Germinal Matrix	brain
17	chr9:95724200-95725400	Enhancers	Spleen	Spleen
18	chr9:95724200-95726000	Weak transcription	Pancreas	Pancrea
19	chr9:95724200-95726200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:95724400-95725400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr9:95724400-95726000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:95724400-95726600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:95724600-95724800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:95724600-95725400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr9:95724600-95725400	Weak transcription	Fetal Thymus	thymus
26	chr9:95724600-95725600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr9:95724600-95725600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr9:95724600-95725600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr9:95724600-95725800	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:95724600-95725800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:95724600-95725800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:95724600-95725800	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr9:95724600-95726000	Enhancers	GM12878-XiMat	blood
34	chr9:95724600-95726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:95724600-95726600	Weak transcription	Fetal Muscle Leg	muscle

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