Variant report

Variant	rs16908655
Chromosome Location	chr9:95706989-95706990
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16908676	0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4147166	0.93[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs4587396	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs59834353	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73651341	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95702000-95709400	Weak transcription	Right Atrium	heart
2	chr9:95703400-95708200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:95703600-95709200	Weak transcription	Spleen	Spleen
4	chr9:95704400-95707400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:95704600-95709200	Weak transcription	HSMMtube	muscle
6	chr9:95705600-95707000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:95705800-95708800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:95705800-95709000	Weak transcription	Fetal Brain Female	brain
9	chr9:95705800-95709200	Weak transcription	Esophagus	oesophagus
10	chr9:95706000-95708800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr9:95706000-95708800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:95706000-95708800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:95706400-95707200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:95706400-95709000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:95706400-95709200	Weak transcription	HSMM	muscle
16	chr9:95706400-95709400	Weak transcription	Psoas Muscle	Psoas
17	chr9:95706600-95707000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:95706600-95707000	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:95706800-95707400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links