Variant report

Variant	rs73651341
Chromosome Location	chr9:95717197-95717198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95711746..95713546-chr9:95716318..95718556,2	MCF-7	breast:
2	chr9:95685909..95687885-chr9:95716846..95719770,2	K562	blood:
3	chr9:95716673..95718561-chr9:95722423..95724467,2	MCF-7	breast:
4	chr9:95717079..95719692-chr9:95722710..95724404,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16908655	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16908676	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147166	0.84[EUR][1000 genomes]
rs4587396	0.84[EUR][1000 genomes]
rs59834353	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95712000-95717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95714800-95717200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr9:95714800-95717400	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr9:95715000-95717400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr9:95715200-95717200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
6	chr9:95715400-95717200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:95715400-95717400	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr9:95715400-95717400	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:95715400-95717800	Weak transcription	Fetal Brain Male	brain
10	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
11	chr9:95715600-95717200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:95715600-95717400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:95715600-95717400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr9:95715600-95718000	Enhancers	Fetal Thymus	thymus
15	chr9:95715800-95717200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:95715800-95717200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:95715800-95717200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr9:95715800-95717200	Enhancers	Spleen	Spleen
19	chr9:95715800-95717200	Enhancers	NH-A	brain
20	chr9:95715800-95717400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr9:95715800-95717400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr9:95715800-95717400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr9:95715800-95717400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:95715800-95717400	Enhancers	Colonic Mucosa	Colon
25	chr9:95715800-95717400	Enhancers	Esophagus	oesophagus
26	chr9:95716000-95717200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr9:95716000-95717400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr9:95716200-95717200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:95716200-95717200	Enhancers	Primary B cells from cord blood	blood
30	chr9:95716400-95717200	Flanking Active TSS	GM12878-XiMat	blood
31	chr9:95716400-95717400	Enhancers	Lung	lung
32	chr9:95716600-95717200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:95716600-95717400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:95716600-95717400	Enhancers	HMEC	breast
35	chr9:95716800-95717200	Enhancers	Right Atrium	heart
36	chr9:95716800-95717200	Enhancers	NHEK	skin
37	chr9:95716800-95717400	Enhancers	Primary B cells from peripheral blood	blood
38	chr9:95716800-95717400	Enhancers	Thymus	Thymus
39	chr9:95716800-95717600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:95716800-95718000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:95716800-95724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:95717000-95717200	Enhancers	Hela-S3	cervix
43	chr9:95717000-95717400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:95717000-95717400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:95717000-95717600	Enhancers	Dnd41	blood
46	chr9:95717000-95718000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:95717000-95719200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood

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