Variant report

Variant	rs16908676
Chromosome Location	chr9:95721674-95721675
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10992619	1.00[MKK][hapmap]
rs16908655	0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3934851	1.00[ASW][hapmap]
rs4147166	1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs4587396	0.84[EUR][1000 genomes]
rs59834353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651341	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95716800-95724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95717000-95725600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:95717200-95723400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:95717200-95724000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:95717200-95724800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr9:95717200-95725800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:95717400-95722400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:95717400-95724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr9:95719000-95723800	Weak transcription	Esophagus	oesophagus
11	chr9:95719600-95725800	Weak transcription	HepG2	liver
12	chr9:95720000-95722600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:95720200-95721800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:95720200-95724000	Weak transcription	Pancreas	Pancrea
16	chr9:95720800-95721800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:95720800-95722000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr9:95721000-95722000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:95721000-95724000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:95721200-95722200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:95721600-95722000	Enhancers	Primary T cells from cord blood	blood
22	chr9:95721600-95723000	Enhancers	Brain Germinal Matrix	brain
23	chr9:95721600-95724200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr9:95721600-95725800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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