Variant report

Variant	rs10992585
Chromosome Location	chr9:95789010-95789011
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95762106..95765077-chr9:95786867..95789885,3	MCF-7	breast:
2	chr9:95787650..95789848-chr9:96075432..96077120,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10115178	0.92[ASN][1000 genomes]
rs10115813	0.92[ASN][1000 genomes]
rs10117910	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs10821056	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821057	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992583	0.94[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992590	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992593	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992602	0.86[AMR][1000 genomes]
rs13287304	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28715500	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34002351	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34274030	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34337651	0.86[AMR][1000 genomes]
rs36044170	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56226047	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7024692	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7048701	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7852416	0.88[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7854887	0.94[CEU][hapmap];0.84[JPT][hapmap]
rs7855476	0.93[CEU][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv521136	chr9:95782667-95798871	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95762600-95790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95763800-95789400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:95766600-95790400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:95766600-95790800	Weak transcription	Right Ventricle	heart
5	chr9:95766600-95791000	Weak transcription	Colonic Mucosa	Colon
6	chr9:95766600-95791000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:95766600-95794000	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:95770200-95793600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:95776600-95799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:95776600-95799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:95779600-95798400	Strong transcription	Brain Germinal Matrix	brain
12	chr9:95781200-95789400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
13	chr9:95781800-95789200	Strong transcription	Lung	lung
14	chr9:95781800-95789600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:95781800-95790400	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr9:95782000-95789600	Genic enhancers	Primary T cells from cord blood	blood
17	chr9:95782200-95790000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr9:95783000-95793800	Weak transcription	Liver	Liver
19	chr9:95783600-95790800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:95783600-95799000	Weak transcription	Esophagus	oesophagus
21	chr9:95784200-95795400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:95785600-95790200	Weak transcription	GM12878-XiMat	blood
23	chr9:95785800-95791800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:95785800-95792200	Weak transcription	Fetal Intestine Large	intestine
25	chr9:95786000-95791600	Weak transcription	Pancreas	Pancrea
26	chr9:95786400-95789600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:95786400-95789800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:95786400-95790000	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:95786400-95790000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr9:95786600-95789400	Genic enhancers	Dnd41	blood
31	chr9:95786600-95789800	Genic enhancers	Primary B cells from cord blood	blood
32	chr9:95787000-95792000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:95787000-95792000	Weak transcription	Gastric	stomach
34	chr9:95787200-95790400	Genic enhancers	Fetal Thymus	thymus
35	chr9:95787800-95789200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr9:95787800-95789600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:95787800-95792400	Weak transcription	Fetal Brain Female	brain
38	chr9:95788000-95790200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr9:95788000-95793600	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:95788200-95789800	Genic enhancers	Monocytes-CD14+_RO01746	blood
41	chr9:95788200-95790200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:95788400-95789600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
43	chr9:95788400-95790600	Weak transcription	Adipose Nuclei	Adipose
44	chr9:95788400-95790600	Weak transcription	Fetal Stomach	stomach
45	chr9:95788400-95791200	Genic enhancers	Thymus	Thymus
46	chr9:95788400-95791800	Weak transcription	Fetal Intestine Small	intestine
47	chr9:95788600-95789400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr9:95788600-95789800	Genic enhancers	Primary B cells from peripheral blood	blood
49	chr9:95788800-95790000	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr9:95788800-95790200	Enhancers	Primary T helper cells fromperipheralblood	blood

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