Variant report

Variant	rs7024692
Chromosome Location	chr9:95794071-95794072
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95792812..95795096-chr9:95844025..95846622,2	K562	blood:
2	chr9:95786084..95787782-chr9:95793550..95796411,2	K562	blood:
3	chr9:95781146..95783755-chr9:95792336..95795083,2	K562	blood:
4	chr9:95793756..95796104-chr9:95801423..95803382,2	MCF-7	breast:
5	chr9:95786580..95788650-chr9:95793860..95795482,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10115178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821056	0.95[ASN][1000 genomes]
rs10821057	0.95[ASN][1000 genomes]
rs10992583	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs10992585	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10992590	0.95[ASN][1000 genomes]
rs10992593	0.95[ASN][1000 genomes]
rs1127857	1.00[CHB][hapmap]
rs12005054	1.00[CHB][hapmap]
rs13284731	1.00[CHB][hapmap]
rs13285107	1.00[CHB][hapmap]
rs13287304	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13294417	1.00[CHB][hapmap]
rs13298119	1.00[CHB][hapmap]
rs13299270	1.00[CHB][hapmap]
rs28715500	0.85[ASN][1000 genomes]
rs34002351	0.85[ASN][1000 genomes]
rs34274030	0.85[ASN][1000 genomes]
rs36044170	0.85[ASN][1000 genomes]
rs56226047	0.95[ASN][1000 genomes]
rs7048701	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7852416	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7854887	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7855476	1.00[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv521136	chr9:95782667-95798871	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
6	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95776600-95799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:95776600-95799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:95779600-95798400	Strong transcription	Brain Germinal Matrix	brain
4	chr9:95783600-95799000	Weak transcription	Esophagus	oesophagus
5	chr9:95784200-95795400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:95789200-95794200	Weak transcription	Fetal Kidney	kidney
7	chr9:95789600-95795000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:95791000-95800400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:95791200-95795000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:95791200-95795600	Weak transcription	GM12878-XiMat	blood
11	chr9:95791200-95796200	Weak transcription	Colonic Mucosa	Colon
12	chr9:95791200-95798800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:95791200-95799800	Strong transcription	Thymus	Thymus
14	chr9:95791400-95796000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:95791400-95796800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr9:95791400-95798600	Strong transcription	Dnd41	blood
17	chr9:95791400-95799800	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr9:95791400-95800000	Genic enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:95791400-95800000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:95791600-95794600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
21	chr9:95791800-95794200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:95791800-95799800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
23	chr9:95792000-95795000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr9:95792000-95795400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr9:95792000-95796400	Genic enhancers	Primary B cells from cord blood	blood
26	chr9:95792000-95797400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr9:95792000-95799200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr9:95792000-95800000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr9:95792400-95798200	Strong transcription	Fetal Brain Female	brain
30	chr9:95792600-95794600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:95792600-95796600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:95792800-95795600	Genic enhancers	Primary T cells from cord blood	blood
33	chr9:95792800-95796000	Weak transcription	Fetal Intestine Small	intestine
34	chr9:95792800-95799000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr9:95793000-95795400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr9:95793200-95794600	Weak transcription	Fetal Intestine Large	intestine
37	chr9:95793200-95795000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr9:95793400-95794600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:95793400-95795200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr9:95793600-95794400	Enhancers	Placenta	Placenta
41	chr9:95793600-95795000	Enhancers	Fetal Muscle Trunk	muscle
42	chr9:95793600-95795000	Enhancers	Fetal Stomach	stomach
43	chr9:95793600-95796400	Genic enhancers	Fetal Thymus	thymus
44	chr9:95793600-95796400	Weak transcription	Gastric	stomach
45	chr9:95793600-95796600	Enhancers	Ovary	ovary
46	chr9:95793600-95798000	Enhancers	Fetal Muscle Leg	muscle
47	chr9:95793800-95794400	Enhancers	Liver	Liver
48	chr9:95793800-95795000	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr9:95793800-95796600	Genic enhancers	Spleen	Spleen
50	chr9:95793800-95798200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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