Variant report

Variant	rs10992601
Chromosome Location	chr9:95803326-95803327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95801381..95803789-chr9:95814303..95817520,3	MCF-7	breast:
2	chr9:95793756..95796104-chr9:95801423..95803382,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10992577	0.84[EUR][1000 genomes]
rs10992578	0.84[EUR][1000 genomes]
rs10992579	0.84[EUR][1000 genomes]
rs10992580	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992584	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10992586	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992587	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992588	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992599	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12380291	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs55654224	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72741055	0.84[EUR][1000 genomes]
rs72741057	0.84[EUR][1000 genomes]
rs72741060	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72741063	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9696630	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95798800-95804200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr9:95799800-95804200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr9:95799800-95805200	Weak transcription	K562	blood
4	chr9:95799800-95806600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:95799800-95815600	Weak transcription	Thymus	Thymus
6	chr9:95800000-95806600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr9:95800000-95809800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:95800200-95807800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:95800400-95805200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:95800800-95803400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:95800800-95803400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:95800800-95803800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:95800800-95804800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:95800800-95805000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:95800800-95805000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:95800800-95805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:95800800-95806000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:95801000-95803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:95801000-95804800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:95801600-95804800	Weak transcription	Primary B cells from cord blood	blood
21	chr9:95801800-95805200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:95802000-95803400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:95802000-95804800	Weak transcription	Primary T cells from cord blood	blood
24	chr9:95802600-95803800	Enhancers	Fetal Muscle Leg	muscle
25	chr9:95802800-95803600	Enhancers	Fetal Muscle Trunk	muscle
26	chr9:95803000-95803600	Enhancers	Spleen	Spleen
27	chr9:95803000-95804200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:95803200-95803400	Enhancers	Placenta	Placenta
29	chr9:95803200-95803800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr9:95803200-95805000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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