Variant report

Variant	rs10992605
Chromosome Location	chr9:95804888-95804889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95803456..95805307-chr9:95808353..95810988,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10992577	0.84[EUR][1000 genomes]
rs10992578	0.84[EUR][1000 genomes]
rs10992579	0.84[EUR][1000 genomes]
rs10992580	0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992584	0.87[EUR][1000 genomes]
rs10992586	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992587	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992588	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992599	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992607	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992623	1.00[YRI][hapmap]
rs12380291	0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4744153	1.00[LWK][hapmap]
rs55654224	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72741055	0.84[EUR][1000 genomes]
rs72741057	0.84[EUR][1000 genomes]
rs72741060	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72741063	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9696630	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95799800-95805200	Weak transcription	K562	blood
2	chr9:95799800-95806600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr9:95799800-95815600	Weak transcription	Thymus	Thymus
4	chr9:95800000-95806600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr9:95800000-95809800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:95800200-95807800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:95800400-95805200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:95800800-95805000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:95800800-95805000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:95800800-95805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:95800800-95806000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr9:95801800-95805200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:95803200-95805000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr9:95803600-95812600	Weak transcription	Spleen	Spleen
15	chr9:95803800-95806600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:95803800-95807200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:95804000-95805400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:95804200-95805000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:95804600-95806800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr9:95804600-95806800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr9:95804600-95807400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr9:95804800-95805600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr9:95804800-95806600	Enhancers	Primary B cells from peripheral blood	blood
24	chr9:95804800-95806600	Enhancers	Primary T cells from cord blood	blood
25	chr9:95804800-95806800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr9:95804800-95809400	Enhancers	Primary B cells from cord blood	blood

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