Variant report

Variant	rs10992809
Chromosome Location	chr9:96391340-96391341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96382620..96384260-chr9:96389901..96392114,2	MCF-7	breast:
2	chr9:96391172..96393560-chr9:96396943..96399376,2	K562	blood:
3	chr9:96389762..96391845-chr9:96392211..96394395,2	K562	blood:
4	chr9:96338187..96341203-chr9:96391174..96393981,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10992808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992814	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992816	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992821	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992824	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992826	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992827	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992830	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992833	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992834	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992838	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992862	1.00[EUR][1000 genomes]
rs12235863	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12237139	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12237261	1.00[EUR][1000 genomes]
rs12238477	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16912647	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1806673	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2398852	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3750353	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3750356	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3750360	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9644970	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv519449	chr9:96382100-96395429	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:96374600-96399800	Weak transcription	K562	blood
4	chr9:96375200-96391800	Weak transcription	Colonic Mucosa	Colon
5	chr9:96376200-96393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:96379800-96391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:96380800-96399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:96382800-96391600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:96384000-96396400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:96384400-96391800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:96384600-96393600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
14	chr9:96384800-96391600	Weak transcription	Gastric	stomach
15	chr9:96385400-96392000	Weak transcription	Pancreas	Pancrea
16	chr9:96385800-96392200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:96386400-96392200	Weak transcription	Ovary	ovary
18	chr9:96386600-96392200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:96386800-96391800	Weak transcription	Right Ventricle	heart
20	chr9:96386800-96392000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:96387200-96392400	Weak transcription	Left Ventricle	heart
23	chr9:96387200-96399800	Weak transcription	Fetal Heart	heart
24	chr9:96387600-96399600	Weak transcription	Fetal Kidney	kidney
25	chr9:96390200-96398800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr9:96390200-96405400	Weak transcription	HepG2	liver
27	chr9:96390400-96391600	Weak transcription	Aorta	Aorta
28	chr9:96390400-96391600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:96390400-96391600	Weak transcription	Thymus	Thymus
30	chr9:96390400-96391800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:96390400-96391800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:96390400-96391800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:96390400-96392000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:96390400-96392000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:96390400-96392000	Weak transcription	Spleen	Spleen
36	chr9:96390400-96392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:96390400-96392400	Weak transcription	Liver	Liver
38	chr9:96390400-96393400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:96390400-96395200	Weak transcription	NHLF	lung
40	chr9:96390400-96398600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:96390400-96399400	Weak transcription	Hela-S3	cervix
42	chr9:96390600-96391600	Weak transcription	Primary T cells from cord blood	blood
43	chr9:96390600-96391600	Weak transcription	Fetal Thymus	thymus
44	chr9:96390600-96391800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:96390600-96391800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:96390600-96391800	Weak transcription	Placenta	Placenta
47	chr9:96390600-96392000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:96390600-96392000	Weak transcription	Esophagus	oesophagus
49	chr9:96390600-96392000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr9:96390600-96392000	Weak transcription	Dnd41	blood

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