Variant report

Variant	rs12237261
Chromosome Location	chr9:96446989-96446990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96445904..96447979-chr9:96722570..96724839,2	MCF-7	breast:
2	chr9:96444762..96447288-chr9:96447833..96449686,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10114689	0.81[CHB][hapmap]
rs10119794	0.82[AMR][1000 genomes]
rs10992808	1.00[EUR][1000 genomes]
rs10992809	1.00[EUR][1000 genomes]
rs10992811	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10992814	0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10992816	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs10992821	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10992824	0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10992826	0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10992827	1.00[EUR][1000 genomes]
rs10992830	1.00[EUR][1000 genomes]
rs10992833	1.00[EUR][1000 genomes]
rs10992834	1.00[EUR][1000 genomes]
rs10992838	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs10992862	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992869	0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12235863	0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12237139	0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12238477	1.00[EUR][1000 genomes]
rs16912647	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs1806673	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs2001205	0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2398852	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs3750353	1.00[EUR][1000 genomes]
rs3750356	0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs3750360	0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7041943	0.81[CHB][hapmap]
rs928369	0.81[CHB][hapmap]
rs946709	0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9644970	0.89[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96436800-96447000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:96440600-96447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:96440800-96447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:96441000-96447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:96442400-96447400	Weak transcription	Adipose Nuclei	Adipose
6	chr9:96442400-96447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:96442600-96447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
10	chr9:96446600-96448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:96446800-96447000	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:96446800-96448200	Enhancers	HUVEC	blood vessel

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