Variant report
| Variant | rs10992869 |
|---|---|
| Chromosome Location | chr9:96462632-96462633 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10119794 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10992811 | 1.00[CHB][hapmap];0.82[YRI][hapmap] |
| rs10992814 | 0.89[CHB][hapmap] |
| rs10992816 | 0.89[CHB][hapmap] |
| rs10992821 | 1.00[CHB][hapmap] |
| rs10992824 | 0.88[CHB][hapmap] |
| rs10992826 | 0.89[CHB][hapmap] |
| rs10992838 | 0.89[CHB][hapmap] |
| rs10992862 | 0.94[AMR][1000 genomes] |
| rs12235863 | 0.89[CHB][hapmap];0.86[CHD][hapmap] |
| rs12237139 | 0.88[CHB][hapmap] |
| rs12237261 | 0.94[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs16909202 | 1.00[CEU][hapmap] |
| rs16909214 | 1.00[CEU][hapmap] |
| rs16909243 | 1.00[CEU][hapmap] |
| rs16912641 | 1.00[CEU][hapmap] |
| rs16912647 | 0.89[CHB][hapmap] |
| rs1806673 | 0.89[CHB][hapmap] |
| rs2001205 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2001588 | 1.00[CEU][hapmap] |
| rs2398852 | 0.89[CHB][hapmap];0.86[CHD][hapmap] |
| rs3750356 | 0.89[CHB][hapmap];0.86[CHD][hapmap] |
| rs3750360 | 0.89[CHB][hapmap] |
| rs7870558 | 1.00[CEU][hapmap] |
| rs7873803 | 1.00[CEU][hapmap] |
| rs946709 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9644970 | 0.88[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893586 | chr9:96363859-96493773 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036609 | chr9:96375217-96477641 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96462200-96463400 | Weak transcription | Stomach Smooth Muscle | stomach |
